miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 5' -58.5 NC_002794.1 + 58340 0.67 0.788436
Target:  5'- -cUCGuCGggaaccugCCGCUCGGCCuGGCGcCg -3'
miRNA:   3'- auAGCuGCa-------GGCGAGCCGG-UCGCaGa -5'
10790 5' -58.5 NC_002794.1 + 60177 0.66 0.869197
Target:  5'- --cCGcGCGggCGCUCGGCCugccucuucAGCGUCg -3'
miRNA:   3'- auaGC-UGCagGCGAGCCGG---------UCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 61550 0.67 0.805886
Target:  5'- --aCGACGccgCCGCggcggCGGCCGcCGUCg -3'
miRNA:   3'- auaGCUGCa--GGCGa----GCCGGUcGCAGa -5'
10790 5' -58.5 NC_002794.1 + 61821 0.78 0.253059
Target:  5'- --cCGGCGgCCGCcggCGGCCGGCGUCa -3'
miRNA:   3'- auaGCUGCaGGCGa--GCCGGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 61884 0.7 0.625443
Target:  5'- cGUCGGCG-CCGCgCGGCgAGCG-Cg -3'
miRNA:   3'- aUAGCUGCaGGCGaGCCGgUCGCaGa -5'
10790 5' -58.5 NC_002794.1 + 63922 0.66 0.869197
Target:  5'- --gCGAcCG-CCGCcCGGCCGGCGagUCUc -3'
miRNA:   3'- auaGCU-GCaGGCGaGCCGGUCGC--AGA- -5'
10790 5' -58.5 NC_002794.1 + 65941 0.66 0.861922
Target:  5'- cGUCGGCGgcgguaucgUCGCgagCGGC-GGCGUCUc -3'
miRNA:   3'- aUAGCUGCa--------GGCGa--GCCGgUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 67220 0.67 0.788436
Target:  5'- -cUCGGCG-CCGggCGGCUAaccGCGUCUc -3'
miRNA:   3'- auAGCUGCaGGCgaGCCGGU---CGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 67391 0.71 0.566254
Target:  5'- cGUCGGCG-CCaGCgUCGgcGCCAGCGUCg -3'
miRNA:   3'- aUAGCUGCaGG-CG-AGC--CGGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 71215 0.67 0.814393
Target:  5'- cGUCGAagguccCGgCCGCguaguggCGGCCGGCGUg- -3'
miRNA:   3'- aUAGCU------GCaGGCGa------GCCGGUCGCAga -5'
10790 5' -58.5 NC_002794.1 + 71848 0.68 0.770458
Target:  5'- cGUCGACGggaccucaCCGC-CGGCCAGacuccgcucgaCGUCg -3'
miRNA:   3'- aUAGCUGCa-------GGCGaGCCGGUC-----------GCAGa -5'
10790 5' -58.5 NC_002794.1 + 72365 0.68 0.742642
Target:  5'- cGUCugcGCGUCCGCggcccCGGCCGuCGUCUu -3'
miRNA:   3'- aUAGc--UGCAGGCGa----GCCGGUcGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 76821 0.69 0.694578
Target:  5'- ---gGACGUCaCGCcagCGGCCGGCGa-- -3'
miRNA:   3'- auagCUGCAG-GCGa--GCCGGUCGCaga -5'
10790 5' -58.5 NC_002794.1 + 81470 1.05 0.003892
Target:  5'- aUAUCGACGUCCGCUCGGCCAGCGUCUc -3'
miRNA:   3'- -AUAGCUGCAGGCGAGCCGGUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 84158 0.66 0.869197
Target:  5'- --aCGGCGccUCCuCUCGGCcCAGCGcUCg -3'
miRNA:   3'- auaGCUGC--AGGcGAGCCG-GUCGC-AGa -5'
10790 5' -58.5 NC_002794.1 + 86959 0.78 0.26504
Target:  5'- cGUCGACGUCCGCUgCGGCgAGCu--- -3'
miRNA:   3'- aUAGCUGCAGGCGA-GCCGgUCGcaga -5'
10790 5' -58.5 NC_002794.1 + 88792 0.67 0.830122
Target:  5'- gAUCGugaacgggcaaacGCGUucCCGUUCGGCUaAGCGUCc -3'
miRNA:   3'- aUAGC-------------UGCA--GGCGAGCCGG-UCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 96596 0.75 0.377555
Target:  5'- cGUCGACgGUCCGCUCuuucuguacgcgGGCggCGGCGUCUg -3'
miRNA:   3'- aUAGCUG-CAGGCGAG------------CCG--GUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 96745 0.66 0.846794
Target:  5'- --cCGgcGCGUCuCGCaagCGGCCGGCgGUCg -3'
miRNA:   3'- auaGC--UGCAG-GCGa--GCCGGUCG-CAGa -5'
10790 5' -58.5 NC_002794.1 + 99762 0.66 0.846794
Target:  5'- --cCGACGUugCCGC-CGcccgcgguGCCGGCGUCg -3'
miRNA:   3'- auaGCUGCA--GGCGaGC--------CGGUCGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.