miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 5' -58.5 NC_002794.1 + 195615 0.66 0.869197
Target:  5'- --cUGGCGUCCgGCccaaaCGGCCGGCGa-- -3'
miRNA:   3'- auaGCUGCAGG-CGa----GCCGGUCGCaga -5'
10790 5' -58.5 NC_002794.1 + 194825 0.67 0.797232
Target:  5'- --gCGACG-CgCGCUcgCGGcCCGGCGUCUc -3'
miRNA:   3'- auaGCUGCaG-GCGA--GCC-GGUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 193805 0.68 0.779509
Target:  5'- --cCGGCGcCCGCUCGucuggcGCCGacGCGUCg -3'
miRNA:   3'- auaGCUGCaGGCGAGC------CGGU--CGCAGa -5'
10790 5' -58.5 NC_002794.1 + 191800 0.67 0.788436
Target:  5'- -cUCGAcCGcCCGCUCGGCC-GC-UCg -3'
miRNA:   3'- auAGCU-GCaGGCGAGCCGGuCGcAGa -5'
10790 5' -58.5 NC_002794.1 + 190356 0.66 0.869197
Target:  5'- gGUCGuCGgCCGCgCGGCgCAGCGg-- -3'
miRNA:   3'- aUAGCuGCaGGCGaGCCG-GUCGCaga -5'
10790 5' -58.5 NC_002794.1 + 189559 0.66 0.846794
Target:  5'- --aUGGCGgucCCGCUCGGUCGGCc--- -3'
miRNA:   3'- auaGCUGCa--GGCGAGCCGGUCGcaga -5'
10790 5' -58.5 NC_002794.1 + 189396 0.66 0.869197
Target:  5'- -cUCGGCcacguaGUCCGCcagGGCCAGCGgguUCUg -3'
miRNA:   3'- auAGCUG------CAGGCGag-CCGGUCGC---AGA- -5'
10790 5' -58.5 NC_002794.1 + 188352 0.68 0.742642
Target:  5'- cGUCG-CGcCCGUcCGGCCGGCGg-- -3'
miRNA:   3'- aUAGCuGCaGGCGaGCCGGUCGCaga -5'
10790 5' -58.5 NC_002794.1 + 188035 0.7 0.642309
Target:  5'- -cUCGcCGUCCcggacGCggcgagucucgacuUCGGCCAGCGUCa -3'
miRNA:   3'- auAGCuGCAGG-----CG--------------AGCCGGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 187583 0.66 0.854452
Target:  5'- cGUCGGCGcggCCGCcgUCGcgacgcCCGGCGUCg -3'
miRNA:   3'- aUAGCUGCa--GGCG--AGCc-----GGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 187421 0.69 0.704322
Target:  5'- -cUCGAgCGUCUGCUggaaGGCCAGCcgcgccGUCUg -3'
miRNA:   3'- auAGCU-GCAGGCGAg---CCGGUCG------CAGA- -5'
10790 5' -58.5 NC_002794.1 + 185765 0.66 0.861922
Target:  5'- --cCGGCGcggCCGCccgucacacgUCGGCCGGCG-Cg -3'
miRNA:   3'- auaGCUGCa--GGCG----------AGCCGGUCGCaGa -5'
10790 5' -58.5 NC_002794.1 + 184101 0.67 0.834161
Target:  5'- --aCGGCGaacgcgccagcgccCCGCUC-GCCGGCGUCa -3'
miRNA:   3'- auaGCUGCa-------------GGCGAGcCGGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 182081 0.68 0.779509
Target:  5'- gGUCGGCcaCCGC-CaGCCAGCGUUc -3'
miRNA:   3'- aUAGCUGcaGGCGaGcCGGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 181521 0.67 0.803305
Target:  5'- --aCGuCGUCCGUUCgcccgccgccggcgGGCCGGCGcUCUc -3'
miRNA:   3'- auaGCuGCAGGCGAG--------------CCGGUCGC-AGA- -5'
10790 5' -58.5 NC_002794.1 + 152816 0.66 0.861922
Target:  5'- gAUCGGgGUgCCGUgCGGacaCGGCGUCa -3'
miRNA:   3'- aUAGCUgCA-GGCGaGCCg--GUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 151837 0.69 0.674951
Target:  5'- --cCGACG-CCGUUCGGCgaGGCGUUc -3'
miRNA:   3'- auaGCUGCaGGCGAGCCGg-UCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 150835 0.67 0.797232
Target:  5'- gAUCGuCGUCagcuccaGCggCGGCC-GCGUCUa -3'
miRNA:   3'- aUAGCuGCAGg------CGa-GCCGGuCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 146986 0.74 0.42729
Target:  5'- gGUCGGCG-CCGC-CGGCCGaCGUCg -3'
miRNA:   3'- aUAGCUGCaGGCGaGCCGGUcGCAGa -5'
10790 5' -58.5 NC_002794.1 + 146221 0.67 0.788436
Target:  5'- -cUCGuCGUCCucCUCGGUCgcGGCGUCg -3'
miRNA:   3'- auAGCuGCAGGc-GAGCCGG--UCGCAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.