miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10791 3' -59.6 NC_002794.1 + 118190 0.66 0.870935
Target:  5'- gCCGACCUUcCGUCG-CCGC-CGC-CGu -3'
miRNA:   3'- -GGCUGGGGcGUAGCaGGCGuGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 136545 0.66 0.870935
Target:  5'- cCCGAgCaCCGgGuacUCGUCuCGCAggUGCUCGg -3'
miRNA:   3'- -GGCUgG-GGCgU---AGCAG-GCGU--GCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 10323 0.66 0.870935
Target:  5'- aCGACUCgGcCGUCGUCgGCGcCGCgacCGg -3'
miRNA:   3'- gGCUGGGgC-GUAGCAGgCGU-GCGa--GC- -5'
10791 3' -59.6 NC_002794.1 + 46592 0.66 0.870935
Target:  5'- gCGACCCUGaaccUGUCCGC-CGC-CGu -3'
miRNA:   3'- gGCUGGGGCgua-GCAGGCGuGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 138816 0.66 0.870935
Target:  5'- -aGACCCCGCcgCGgUCuCGa--GCUCGc -3'
miRNA:   3'- ggCUGGGGCGuaGC-AG-GCgugCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 44042 0.66 0.868849
Target:  5'- uCCGcCCCCGgG--GUCCGCGgcagcgacagaagcCGCUCGu -3'
miRNA:   3'- -GGCuGGGGCgUagCAGGCGU--------------GCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 184513 0.66 0.863917
Target:  5'- gCgGGCCCCGCG-CG-CgGCGCGggCGa -3'
miRNA:   3'- -GgCUGGGGCGUaGCaGgCGUGCgaGC- -5'
10791 3' -59.6 NC_002794.1 + 75655 0.66 0.863917
Target:  5'- gCGGCagCgGCGcCGUCCGCcgcuacACGCUCGc -3'
miRNA:   3'- gGCUGg-GgCGUaGCAGGCG------UGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 49746 0.66 0.863917
Target:  5'- gCGAgCCCGUAggcCGcUCGCacGCGCUCGu -3'
miRNA:   3'- gGCUgGGGCGUa--GCaGGCG--UGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 107043 0.66 0.863917
Target:  5'- -gGAcCCCCGCGUCGgaggCgGCGgGCgCGg -3'
miRNA:   3'- ggCU-GGGGCGUAGCa---GgCGUgCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 84478 0.66 0.863917
Target:  5'- uCCGGCCUUua--CGUUCGaCGCGCUCGa -3'
miRNA:   3'- -GGCUGGGGcguaGCAGGC-GUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 109519 0.66 0.863917
Target:  5'- cCCGGCCCgCGC-UCGUUCG-GCG-UCGg -3'
miRNA:   3'- -GGCUGGG-GCGuAGCAGGCgUGCgAGC- -5'
10791 3' -59.6 NC_002794.1 + 148310 0.66 0.863917
Target:  5'- aCGACCCCGaCGgcCGaCCGCG-GUUCGa -3'
miRNA:   3'- gGCUGGGGC-GUa-GCaGGCGUgCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 194529 0.66 0.863917
Target:  5'- gCCGGCCCaGCAgCGccgCCaGCACGCcCGc -3'
miRNA:   3'- -GGCUGGGgCGUaGCa--GG-CGUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 59326 0.66 0.863917
Target:  5'- cCCGACUUCGC--CGcCCGCcaccacGCGCUCu -3'
miRNA:   3'- -GGCUGGGGCGuaGCaGGCG------UGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 41563 0.66 0.863917
Target:  5'- uCCGAUCgCGCGUCaGgaggaacucCCGCACGgaCGg -3'
miRNA:   3'- -GGCUGGgGCGUAG-Ca--------GGCGUGCgaGC- -5'
10791 3' -59.6 NC_002794.1 + 50012 0.66 0.862491
Target:  5'- uUCGGCCCgcaucugcuugaGCAgcgCGUCCuCGCGCUUGc -3'
miRNA:   3'- -GGCUGGGg-----------CGUa--GCAGGcGUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 110852 0.66 0.856714
Target:  5'- aCGA-UCCGCuggaaguccacGUCGUCCGgCACGUUCu -3'
miRNA:   3'- gGCUgGGGCG-----------UAGCAGGC-GUGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 88876 0.66 0.856714
Target:  5'- aCCGAaagcguuggCGgAUCGUCCuauGCGCGCUCGa -3'
miRNA:   3'- -GGCUggg------GCgUAGCAGG---CGUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 34344 0.66 0.856714
Target:  5'- aCGGCCgCGC--CGuUCCGCcCGCUCu -3'
miRNA:   3'- gGCUGGgGCGuaGC-AGGCGuGCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.