miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10791 3' -59.6 NC_002794.1 + 81011 1.09 0.00225
Target:  5'- uCCGACCCCGCAUCGUCCGCACGCUCGu -3'
miRNA:   3'- -GGCUGGGGCGUAGCAGGCGUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 193765 0.81 0.180314
Target:  5'- gCCGGCCCCGC-UCGcUCGCcCGCUCGa -3'
miRNA:   3'- -GGCUGGGGCGuAGCaGGCGuGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 23612 0.79 0.227708
Target:  5'- cCCGACCCCGCGggCGcCCGgACGCgCGg -3'
miRNA:   3'- -GGCUGGGGCGUa-GCaGGCgUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 106816 0.78 0.272869
Target:  5'- uCUGACCaauUGCGUCGUCCG-GCGCUCGg -3'
miRNA:   3'- -GGCUGGg--GCGUAGCAGGCgUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 193379 0.78 0.272869
Target:  5'- gCCGcgcuCCUCGcCGUCGUCCGCcucGCGCUCGc -3'
miRNA:   3'- -GGCu---GGGGC-GUAGCAGGCG---UGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 31337 0.78 0.272869
Target:  5'- cUCGGCgCCCGCcgUGUCCGCcgccCGCUCGu -3'
miRNA:   3'- -GGCUG-GGGCGuaGCAGGCGu---GCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 49023 0.77 0.304587
Target:  5'- gCGGCCgCgGCGUCGUCCGgCGCGgUCGu -3'
miRNA:   3'- gGCUGG-GgCGUAGCAGGC-GUGCgAGC- -5'
10791 3' -59.6 NC_002794.1 + 141589 0.76 0.331946
Target:  5'- aUGACgCCCGCGUCG-CCGgGCgGCUCGg -3'
miRNA:   3'- gGCUG-GGGCGUAGCaGGCgUG-CGAGC- -5'
10791 3' -59.6 NC_002794.1 + 31395 0.76 0.353623
Target:  5'- gCGGCCCCGCcgCGcCCGCcGCGCcCGc -3'
miRNA:   3'- gGCUGGGGCGuaGCaGGCG-UGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 82788 0.76 0.353623
Target:  5'- aCCGACCgCCGCGUCca-CGCGCGCcgCGa -3'
miRNA:   3'- -GGCUGG-GGCGUAGcagGCGUGCGa-GC- -5'
10791 3' -59.6 NC_002794.1 + 69825 0.75 0.368621
Target:  5'- aCCGGCgUCCGCccgGUCCGCugGCUCa -3'
miRNA:   3'- -GGCUG-GGGCGuagCAGGCGugCGAGc -5'
10791 3' -59.6 NC_002794.1 + 70340 0.75 0.391923
Target:  5'- gCCGACggccgggcgCCCGC-UCGUCCGCccaccCGCUCGc -3'
miRNA:   3'- -GGCUG---------GGGCGuAGCAGGCGu----GCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 195287 0.74 0.40798
Target:  5'- aCCGACCCgCGCAcCG-CUGCACGCa-- -3'
miRNA:   3'- -GGCUGGG-GCGUaGCaGGCGUGCGagc -5'
10791 3' -59.6 NC_002794.1 + 47927 0.74 0.416162
Target:  5'- cCCGACCCCGacgcagAUCGgcgCCGCGCGUccCGg -3'
miRNA:   3'- -GGCUGGGGCg-----UAGCa--GGCGUGCGa-GC- -5'
10791 3' -59.6 NC_002794.1 + 36920 0.74 0.438745
Target:  5'- gCCGGCCCCGCGaccgcggaggagaaaGUCCGCGuCGCgCGg -3'
miRNA:   3'- -GGCUGGGGCGUag-------------CAGGCGU-GCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 145295 0.74 0.441297
Target:  5'- cUCGACCCCGCuGUCGUauuaaaCCGgCGCGCggCGg -3'
miRNA:   3'- -GGCUGGGGCG-UAGCA------GGC-GUGCGa-GC- -5'
10791 3' -59.6 NC_002794.1 + 56509 0.74 0.441297
Target:  5'- -aGGCCCCGCGggCGcUCCG-GCGCUCGu -3'
miRNA:   3'- ggCUGGGGCGUa-GC-AGGCgUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 40619 0.74 0.441297
Target:  5'- uCCGACUCCGCGgaGUCCGCgaGCGCg-- -3'
miRNA:   3'- -GGCUGGGGCGUagCAGGCG--UGCGagc -5'
10791 3' -59.6 NC_002794.1 + 192637 0.73 0.449004
Target:  5'- gCGGCCgcuccagCCGCGcCG-CCGCGCGCUCGc -3'
miRNA:   3'- gGCUGG-------GGCGUaGCaGGCGUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 85002 0.73 0.449864
Target:  5'- cCCGACCgCCGCGcUCGggugccCCGggccCACGCUCGg -3'
miRNA:   3'- -GGCUGG-GGCGU-AGCa-----GGC----GUGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.