miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10791 3' -59.6 NC_002794.1 + 85002 0.73 0.449864
Target:  5'- cCCGACCgCCGCGcUCGggugccCCGggccCACGCUCGg -3'
miRNA:   3'- -GGCUGG-GGCGU-AGCa-----GGC----GUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 191746 0.73 0.462011
Target:  5'- uCCGAggacucggacagagcCCCCucggaAUCGUCCGCgACGCUCGa -3'
miRNA:   3'- -GGCU---------------GGGGcg---UAGCAGGCG-UGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 99246 0.73 0.462011
Target:  5'- gCCgGACCCCGCcgCGgaggggcucgggggcUCCgGCGCGCUCc -3'
miRNA:   3'- -GG-CUGGGGCGuaGC---------------AGG-CGUGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 39834 0.73 0.46727
Target:  5'- cCCGACCUcaCGCGaccgauccUCGUUCGC-CGCUCGc -3'
miRNA:   3'- -GGCUGGG--GCGU--------AGCAGGCGuGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 53118 0.73 0.476102
Target:  5'- uCCGGagCUCGCGUCGaCCGCGgCGCUCa -3'
miRNA:   3'- -GGCUg-GGGCGUAGCaGGCGU-GCGAGc -5'
10791 3' -59.6 NC_002794.1 + 184395 0.73 0.485016
Target:  5'- -aGACCCCGaacaCGUCCgacaGCGCGCUCa -3'
miRNA:   3'- ggCUGGGGCgua-GCAGG----CGUGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 79040 0.73 0.494009
Target:  5'- gCCGGCCCgGCcgC-UCC-CGCGCUCGc -3'
miRNA:   3'- -GGCUGGGgCGuaGcAGGcGUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 43784 0.72 0.503078
Target:  5'- gCCGaacGCCCCGCGUCcgacCCGC-CGCUCc -3'
miRNA:   3'- -GGC---UGGGGCGUAGca--GGCGuGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 151738 0.72 0.512218
Target:  5'- gUCGGCCgCCG-GUCGcCuCGCGCGCUCGu -3'
miRNA:   3'- -GGCUGG-GGCgUAGCaG-GCGUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 47333 0.72 0.521426
Target:  5'- cCCGGCuCCCGCGgcggCGgccUCCGgACGUUCGc -3'
miRNA:   3'- -GGCUG-GGGCGUa---GC---AGGCgUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 29757 0.72 0.521426
Target:  5'- gCCGAgCCCGCGccgagCGUCUcgGC-CGCUCGa -3'
miRNA:   3'- -GGCUgGGGCGUa----GCAGG--CGuGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 65752 0.72 0.530698
Target:  5'- aCGGCCCCGCGcCG-CCGC-CGCcCGu -3'
miRNA:   3'- gGCUGGGGCGUaGCaGGCGuGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 113234 0.72 0.534423
Target:  5'- gCGACCgccguccaggaucucCCGCugcagcgCGUCCGCcCGCUCGg -3'
miRNA:   3'- gGCUGG---------------GGCGua-----GCAGGCGuGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 194157 0.72 0.540965
Target:  5'- cCCGcgaGCCCUGCcggcgcgccuucucCGUCCGCACGUUCa -3'
miRNA:   3'- -GGC---UGGGGCGua------------GCAGGCGUGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 115302 0.72 0.549415
Target:  5'- -gGACCgCUGCGccgcCGUCCGCACGgUCGc -3'
miRNA:   3'- ggCUGG-GGCGUa---GCAGGCGUGCgAGC- -5'
10791 3' -59.6 NC_002794.1 + 63495 0.71 0.55885
Target:  5'- aCGACgCCGCggcgucGUCGUCCGCgACGcCUCc -3'
miRNA:   3'- gGCUGgGGCG------UAGCAGGCG-UGC-GAGc -5'
10791 3' -59.6 NC_002794.1 + 72466 0.71 0.568331
Target:  5'- cCCGGCCCCGCggCGgcgCCGaaaagacgauCACGCagUCGg -3'
miRNA:   3'- -GGCUGGGGCGuaGCa--GGC----------GUGCG--AGC- -5'
10791 3' -59.6 NC_002794.1 + 138519 0.71 0.577851
Target:  5'- cCCGgucGCUUCGC-UCGUUCGCuCGCUCGg -3'
miRNA:   3'- -GGC---UGGGGCGuAGCAGGCGuGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 55422 0.71 0.577851
Target:  5'- gCGACCCCGg--CGUCCGCGuCGCccCGc -3'
miRNA:   3'- gGCUGGGGCguaGCAGGCGU-GCGa-GC- -5'
10791 3' -59.6 NC_002794.1 + 26611 0.71 0.586449
Target:  5'- cCCGcCCCCGCGUcccccacCGUCCGCguccGCGCa-- -3'
miRNA:   3'- -GGCuGGGGCGUA-------GCAGGCG----UGCGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.