miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10791 3' -59.6 NC_002794.1 + 57405 0.66 0.856714
Target:  5'- uCCGGCgCCCGCGUgGcCgGCGUGCUgGu -3'
miRNA:   3'- -GGCUG-GGGCGUAgCaGgCGUGCGAgC- -5'
10791 3' -59.6 NC_002794.1 + 34344 0.66 0.856714
Target:  5'- aCGGCCgCGC--CGuUCCGCcCGCUCu -3'
miRNA:   3'- gGCUGGgGCGuaGC-AGGCGuGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 110852 0.66 0.856714
Target:  5'- aCGA-UCCGCuggaaguccacGUCGUCCGgCACGUUCu -3'
miRNA:   3'- gGCUgGGGCG-----------UAGCAGGC-GUGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 88876 0.66 0.856714
Target:  5'- aCCGAaagcguuggCGgAUCGUCCuauGCGCGCUCGa -3'
miRNA:   3'- -GGCUggg------GCgUAGCAGG---CGUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 147990 0.66 0.856714
Target:  5'- gUGuCCCUGCuggccuUCGUCCGCGuCGgcCUCGg -3'
miRNA:   3'- gGCuGGGGCGu-----AGCAGGCGU-GC--GAGC- -5'
10791 3' -59.6 NC_002794.1 + 180037 0.66 0.855983
Target:  5'- uCCGA-CCCGCAUcaCGUCCucGUcacacugGCGCUCa -3'
miRNA:   3'- -GGCUgGGGCGUA--GCAGG--CG-------UGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 24182 0.66 0.84933
Target:  5'- cUCGACCCCGCGgcacCGagaCCGaGCGCggCGg -3'
miRNA:   3'- -GGCUGGGGCGUa---GCa--GGCgUGCGa-GC- -5'
10791 3' -59.6 NC_002794.1 + 10237 0.66 0.84933
Target:  5'- gUGACCCCGC--CGUCuCGUgucCGUUCGa -3'
miRNA:   3'- gGCUGGGGCGuaGCAG-GCGu--GCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 11808 0.66 0.84933
Target:  5'- gCCG-CCgCCGcCGUCG-CCGCcuuCGCUCc -3'
miRNA:   3'- -GGCuGG-GGC-GUAGCaGGCGu--GCGAGc -5'
10791 3' -59.6 NC_002794.1 + 61735 0.66 0.84933
Target:  5'- cCCG-CCCCGCGgaaGcCCGCGCGaggugugCGa -3'
miRNA:   3'- -GGCuGGGGCGUag-CaGGCGUGCga-----GC- -5'
10791 3' -59.6 NC_002794.1 + 75743 0.66 0.84933
Target:  5'- cCCGAUCCCGUccuUCGgcugUCUGCAggagaUGCUCa -3'
miRNA:   3'- -GGCUGGGGCGu--AGC----AGGCGU-----GCGAGc -5'
10791 3' -59.6 NC_002794.1 + 84170 0.66 0.84933
Target:  5'- cUCGGCCCaGCGcUCGgcCCG-GCGCUCGg -3'
miRNA:   3'- -GGCUGGGgCGU-AGCa-GGCgUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 193415 0.66 0.84933
Target:  5'- uCCGccGCCgCCGCccGUCGUCCagccguccgGCACGC-CGc -3'
miRNA:   3'- -GGC--UGG-GGCG--UAGCAGG---------CGUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 194417 0.66 0.84933
Target:  5'- uCCG-CCaCCGCcguaaacacGUCGUCCGCccccggcCGCUCc -3'
miRNA:   3'- -GGCuGG-GGCG---------UAGCAGGCGu------GCGAGc -5'
10791 3' -59.6 NC_002794.1 + 195408 0.66 0.84933
Target:  5'- cCUGGCCacacaCGCGUCccgaUCCGCAcacggagcCGCUCGc -3'
miRNA:   3'- -GGCUGGg----GCGUAGc---AGGCGU--------GCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 156700 0.66 0.847081
Target:  5'- cUCGGCCgCCGCcgucccaccgaucgGUCGuucUCCGCG-GCUCGu -3'
miRNA:   3'- -GGCUGG-GGCG--------------UAGC---AGGCGUgCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 59187 0.66 0.841772
Target:  5'- -gGACCCCGUggcgGUCGaCgCGCACG-UCGg -3'
miRNA:   3'- ggCUGGGGCG----UAGCaG-GCGUGCgAGC- -5'
10791 3' -59.6 NC_002794.1 + 114479 0.66 0.841772
Target:  5'- -aGACCCaCGCGUacccgGUCCacGCGCGC-CGg -3'
miRNA:   3'- ggCUGGG-GCGUAg----CAGG--CGUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 102623 0.66 0.841772
Target:  5'- gCCGcACCUgGCgGUCaUCCGCcggcuggcggcGCGCUCGg -3'
miRNA:   3'- -GGC-UGGGgCG-UAGcAGGCG-----------UGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 143762 0.66 0.841772
Target:  5'- -gGGCUCCGCucGUCGUCgGUGUGCUCu -3'
miRNA:   3'- ggCUGGGGCG--UAGCAGgCGUGCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.