miRNA display CGI


Results 41 - 60 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10791 3' -59.6 NC_002794.1 + 143762 0.66 0.841772
Target:  5'- -gGGCUCCGCucGUCGUCgGUGUGCUCu -3'
miRNA:   3'- ggCUGGGGCG--UAGCAGgCGUGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 37228 0.66 0.841007
Target:  5'- aCCgGACCUCGCcgaucagGUCGUCgaCGCucuCGCUCu -3'
miRNA:   3'- -GG-CUGGGGCG-------UAGCAG--GCGu--GCGAGc -5'
10791 3' -59.6 NC_002794.1 + 59434 0.66 0.834045
Target:  5'- gCCGA-CCCGCAgaUCG-CCGcCGgGCUCu -3'
miRNA:   3'- -GGCUgGGGCGU--AGCaGGC-GUgCGAGc -5'
10791 3' -59.6 NC_002794.1 + 143715 0.66 0.834045
Target:  5'- gCgGGCCCCggcggGCGUCGUCCucGCcCGC-CGg -3'
miRNA:   3'- -GgCUGGGG-----CGUAGCAGG--CGuGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 69141 0.66 0.834045
Target:  5'- gCCGGCCaagCCGCuUCGcCCacguuCACGCUCa -3'
miRNA:   3'- -GGCUGG---GGCGuAGCaGGc----GUGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 185330 0.66 0.834045
Target:  5'- uCC-ACaCCCGCGUCGaCCGCuCGCgCGc -3'
miRNA:   3'- -GGcUG-GGGCGUAGCaGGCGuGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 12230 0.66 0.834045
Target:  5'- gCGGCgCCgGCGgcgcCGUCCGCgGCGC-CGa -3'
miRNA:   3'- gGCUG-GGgCGUa---GCAGGCG-UGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 30545 0.67 0.826156
Target:  5'- -aGACCCuCGgAUgGaUCCGCGCccGCUCGu -3'
miRNA:   3'- ggCUGGG-GCgUAgC-AGGCGUG--CGAGC- -5'
10791 3' -59.6 NC_002794.1 + 53743 0.67 0.826156
Target:  5'- gCCGGCCgCCGCugcCG-CCGC-CGCUg- -3'
miRNA:   3'- -GGCUGG-GGCGua-GCaGGCGuGCGAgc -5'
10791 3' -59.6 NC_002794.1 + 66133 0.67 0.826156
Target:  5'- -aGACUCaCGCucgucGUCGUCCaaACGCUCGc -3'
miRNA:   3'- ggCUGGG-GCG-----UAGCAGGcgUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 14898 0.67 0.826156
Target:  5'- aCCGACCuUCGCGcUCGaUCgaGCGgGCUCGc -3'
miRNA:   3'- -GGCUGG-GGCGU-AGC-AGg-CGUgCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 148614 0.67 0.821346
Target:  5'- cUCGGCCCUGCAgaucugggucuccgaUCGcggCgGCGUGCUCGg -3'
miRNA:   3'- -GGCUGGGGCGU---------------AGCa--GgCGUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 108487 0.67 0.818109
Target:  5'- aCCGGCCaaG-AUCGUCCuGUuuGCGCUCu -3'
miRNA:   3'- -GGCUGGggCgUAGCAGG-CG--UGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 84118 0.67 0.818109
Target:  5'- cCCGcGCCgCCGCGccCGaCCGCACGCg-- -3'
miRNA:   3'- -GGC-UGG-GGCGUa-GCaGGCGUGCGagc -5'
10791 3' -59.6 NC_002794.1 + 118791 0.67 0.818109
Target:  5'- -aGGCUCCGCAgCGUC-GCcCGCUUGg -3'
miRNA:   3'- ggCUGGGGCGUaGCAGgCGuGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 144990 0.67 0.818109
Target:  5'- aCCGGCgCCGgG-CGUCCGCcugGCGCa-- -3'
miRNA:   3'- -GGCUGgGGCgUaGCAGGCG---UGCGagc -5'
10791 3' -59.6 NC_002794.1 + 145827 0.67 0.818109
Target:  5'- gCGAgCCgagCGCGUCGacggUCGcCACGCUCGa -3'
miRNA:   3'- gGCUgGG---GCGUAGCa---GGC-GUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 103062 0.67 0.813209
Target:  5'- cCCGAggcCCCCcucaauaaaaaaaaaGCGUCGcggcCCGCGCGCgCGg -3'
miRNA:   3'- -GGCU---GGGG---------------CGUAGCa---GGCGUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 66264 0.67 0.813209
Target:  5'- uCCGGCCCCGUAgacgagcggagggGUCCGaGCGCcCGu -3'
miRNA:   3'- -GGCUGGGGCGUag-----------CAGGCgUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 113867 0.67 0.809913
Target:  5'- uCCGGCCaggCGCGcUCGgccgCgGCGCGCgUCGg -3'
miRNA:   3'- -GGCUGGg--GCGU-AGCa---GgCGUGCG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.