miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10791 3' -59.6 NC_002794.1 + 645 0.69 0.673955
Target:  5'- cCCGuCCCCGCcgCG-CaGCGCGuCUCGc -3'
miRNA:   3'- -GGCuGGGGCGuaGCaGgCGUGC-GAGC- -5'
10791 3' -59.6 NC_002794.1 + 10237 0.66 0.84933
Target:  5'- gUGACCCCGC--CGUCuCGUgucCGUUCGa -3'
miRNA:   3'- gGCUGGGGCGuaGCAG-GCGu--GCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 10323 0.66 0.870935
Target:  5'- aCGACUCgGcCGUCGUCgGCGcCGCgacCGg -3'
miRNA:   3'- gGCUGGGgC-GUAGCAGgCGU-GCGa--GC- -5'
10791 3' -59.6 NC_002794.1 + 11808 0.66 0.84933
Target:  5'- gCCG-CCgCCGcCGUCG-CCGCcuuCGCUCc -3'
miRNA:   3'- -GGCuGG-GGC-GUAGCaGGCGu--GCGAGc -5'
10791 3' -59.6 NC_002794.1 + 12026 0.67 0.801574
Target:  5'- gCCGGCCCgGg--CGUCCGCGC-CUUc -3'
miRNA:   3'- -GGCUGGGgCguaGCAGGCGUGcGAGc -5'
10791 3' -59.6 NC_002794.1 + 12182 0.71 0.59699
Target:  5'- gCCGACgCCGCcgCGgCCggGCGcCGCUCGg -3'
miRNA:   3'- -GGCUGgGGCGuaGCaGG--CGU-GCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 12230 0.66 0.834045
Target:  5'- gCGGCgCCgGCGgcgcCGUCCGCgGCGC-CGa -3'
miRNA:   3'- gGCUG-GGgCGUa---GCAGGCG-UGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 12473 0.67 0.793099
Target:  5'- cCCGACgaCCGUcugAUCGUCaccuGCACGUUCc -3'
miRNA:   3'- -GGCUGg-GGCG---UAGCAGg---CGUGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 13393 0.68 0.757984
Target:  5'- uCCGcCCCCucGCGgacUCGUCUGCucuggACGCUCu -3'
miRNA:   3'- -GGCuGGGG--CGU---AGCAGGCG-----UGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 14653 0.67 0.793099
Target:  5'- gCCGGCgCCGCggCGUCgGUcCGaCUCGc -3'
miRNA:   3'- -GGCUGgGGCGuaGCAGgCGuGC-GAGC- -5'
10791 3' -59.6 NC_002794.1 + 14898 0.67 0.826156
Target:  5'- aCCGACCuUCGCGcUCGaUCgaGCGgGCUCGc -3'
miRNA:   3'- -GGCUGG-GGCGU-AGC-AGg-CGUgCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 17261 0.68 0.730585
Target:  5'- gCGACCCgGC-UCGUCacccggGCACGC-CGc -3'
miRNA:   3'- gGCUGGGgCGuAGCAGg-----CGUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 17400 0.68 0.728733
Target:  5'- uCCGACCgCCGaagccaccgcggcCAUCGcggucUCCGCgccgccgGCGCUCGg -3'
miRNA:   3'- -GGCUGG-GGC-------------GUAGC-----AGGCG-------UGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 19011 0.68 0.775769
Target:  5'- aCCGuCCCCGCGgguuUCGcCCugGCGgCGUUCGa -3'
miRNA:   3'- -GGCuGGGGCGU----AGCaGG--CGU-GCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 19798 0.66 0.856714
Target:  5'- aCGcuGCUCCGC-UCGgaCCGCGCGC-CGg -3'
miRNA:   3'- gGC--UGGGGCGuAGCa-GGCGUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 21421 0.67 0.801574
Target:  5'- cUCGAgCCCGUccuccgauaacGUCgGUCuCGCGuCGCUCGg -3'
miRNA:   3'- -GGCUgGGGCG-----------UAG-CAG-GCGU-GCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 23612 0.79 0.227708
Target:  5'- cCCGACCCCGCGggCGcCCGgACGCgCGg -3'
miRNA:   3'- -GGCUGGGGCGUa-GCaGGCgUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 23702 0.68 0.76693
Target:  5'- -aGGCCCCGaagCGUcccgaaCCGCGCGCggCGg -3'
miRNA:   3'- ggCUGGGGCguaGCA------GGCGUGCGa-GC- -5'
10791 3' -59.6 NC_002794.1 + 24182 0.66 0.84933
Target:  5'- cUCGACCCCGCGgcacCGagaCCGaGCGCggCGg -3'
miRNA:   3'- -GGCUGGGGCGUa---GCa--GGCgUGCGa-GC- -5'
10791 3' -59.6 NC_002794.1 + 26611 0.71 0.586449
Target:  5'- cCCGcCCCCGCGUcccccacCGUCCGCguccGCGCa-- -3'
miRNA:   3'- -GGCuGGGGCGUA-------GCAGGCG----UGCGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.