miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10791 3' -59.6 NC_002794.1 + 27414 0.68 0.775769
Target:  5'- aCCGGCcgCCCGCGUCcgaaCGCACGgaCGc -3'
miRNA:   3'- -GGCUG--GGGCGUAGcag-GCGUGCgaGC- -5'
10791 3' -59.6 NC_002794.1 + 29757 0.72 0.521426
Target:  5'- gCCGAgCCCGCGccgagCGUCUcgGC-CGCUCGa -3'
miRNA:   3'- -GGCUgGGGCGUa----GCAGG--CGuGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 30058 0.73 0.449864
Target:  5'- cCCGGgCCCGCGggGUCCGguCGCcCGg -3'
miRNA:   3'- -GGCUgGGGCGUagCAGGCguGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 30545 0.67 0.826156
Target:  5'- -aGACCCuCGgAUgGaUCCGCGCccGCUCGu -3'
miRNA:   3'- ggCUGGG-GCgUAgC-AGGCGUG--CGAGC- -5'
10791 3' -59.6 NC_002794.1 + 30676 0.69 0.711929
Target:  5'- gCGAUCUCGCA-CGUCCggcggacguGCACGUUCc -3'
miRNA:   3'- gGCUGGGGCGUaGCAGG---------CGUGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 31337 0.78 0.272869
Target:  5'- cUCGGCgCCCGCcgUGUCCGCcgccCGCUCGu -3'
miRNA:   3'- -GGCUG-GGGCGuaGCAGGCGu---GCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 31395 0.76 0.353623
Target:  5'- gCGGCCCCGCcgCGcCCGCcGCGCcCGc -3'
miRNA:   3'- gGCUGGGGCGuaGCaGGCG-UGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 31920 0.69 0.683512
Target:  5'- gCCGACaggacgUCCaGCcgCG-CCGCACGCUCu -3'
miRNA:   3'- -GGCUG------GGG-CGuaGCaGGCGUGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 34054 0.67 0.809913
Target:  5'- gCCGGCCCgCGCA-CGacCCGC-CGUUCc -3'
miRNA:   3'- -GGCUGGG-GCGUaGCa-GGCGuGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 34344 0.66 0.856714
Target:  5'- aCGGCCgCGC--CGuUCCGCcCGCUCu -3'
miRNA:   3'- gGCUGGgGCGuaGC-AGGCGuGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 36920 0.74 0.438745
Target:  5'- gCCGGCCCCGCGaccgcggaggagaaaGUCCGCGuCGCgCGg -3'
miRNA:   3'- -GGCUGGGGCGUag-------------CAGGCGU-GCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 37228 0.66 0.841007
Target:  5'- aCCgGACCUCGCcgaucagGUCGUCgaCGCucuCGCUCu -3'
miRNA:   3'- -GG-CUGGGGCG-------UAGCAG--GCGu--GCGAGc -5'
10791 3' -59.6 NC_002794.1 + 39426 0.71 0.587407
Target:  5'- aCCGGCCCCGUgGUCuUCgGCAUGCUg- -3'
miRNA:   3'- -GGCUGGGGCG-UAGcAGgCGUGCGAgc -5'
10791 3' -59.6 NC_002794.1 + 39600 0.66 0.856714
Target:  5'- gCGGCCUCGaccua--CGCGCGCUCGa -3'
miRNA:   3'- gGCUGGGGCguagcagGCGUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 39834 0.73 0.46727
Target:  5'- cCCGACCUcaCGCGaccgauccUCGUUCGC-CGCUCGc -3'
miRNA:   3'- -GGCUGGG--GCGU--------AGCAGGCGuGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 40619 0.74 0.441297
Target:  5'- uCCGACUCCGCGgaGUCCGCgaGCGCg-- -3'
miRNA:   3'- -GGCUGGGGCGUagCAGGCG--UGCGagc -5'
10791 3' -59.6 NC_002794.1 + 41563 0.66 0.863917
Target:  5'- uCCGAUCgCGCGUCaGgaggaacucCCGCACGgaCGg -3'
miRNA:   3'- -GGCUGGgGCGUAG-Ca--------GGCGUGCgaGC- -5'
10791 3' -59.6 NC_002794.1 + 41692 0.7 0.654756
Target:  5'- cCCgGACCgCCGgAUCGUCCcggGCGCGCa-- -3'
miRNA:   3'- -GG-CUGG-GGCgUAGCAGG---CGUGCGagc -5'
10791 3' -59.6 NC_002794.1 + 42257 0.67 0.809913
Target:  5'- uCCGAgCCCGCuccgcccUCGccccgCCGC-CGCUCc -3'
miRNA:   3'- -GGCUgGGGCGu------AGCa----GGCGuGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 42566 0.69 0.683512
Target:  5'- gCGACCCCGCggCGgacCCGCggacggaggaggGCGCggCGg -3'
miRNA:   3'- gGCUGGGGCGuaGCa--GGCG------------UGCGa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.