miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10791 3' -59.6 NC_002794.1 + 195408 0.66 0.84933
Target:  5'- cCUGGCCacacaCGCGUCccgaUCCGCAcacggagcCGCUCGc -3'
miRNA:   3'- -GGCUGGg----GCGUAGc---AGGCGU--------GCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 195287 0.74 0.40798
Target:  5'- aCCGACCCgCGCAcCG-CUGCACGCa-- -3'
miRNA:   3'- -GGCUGGG-GCGUaGCaGGCGUGCGagc -5'
10791 3' -59.6 NC_002794.1 + 194529 0.66 0.863917
Target:  5'- gCCGGCCCaGCAgCGccgCCaGCACGCcCGc -3'
miRNA:   3'- -GGCUGGGgCGUaGCa--GG-CGUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 194417 0.66 0.84933
Target:  5'- uCCG-CCaCCGCcguaaacacGUCGUCCGCccccggcCGCUCc -3'
miRNA:   3'- -GGCuGG-GGCG---------UAGCAGGCGu------GCGAGc -5'
10791 3' -59.6 NC_002794.1 + 194157 0.72 0.540965
Target:  5'- cCCGcgaGCCCUGCcggcgcgccuucucCGUCCGCACGUUCa -3'
miRNA:   3'- -GGC---UGGGGCGua------------GCAGGCGUGCGAGc -5'
10791 3' -59.6 NC_002794.1 + 193946 0.7 0.664367
Target:  5'- uCCGGCCCCGCcgCcaCCGC-CGC-Ca -3'
miRNA:   3'- -GGCUGGGGCGuaGcaGGCGuGCGaGc -5'
10791 3' -59.6 NC_002794.1 + 193876 0.7 0.635493
Target:  5'- cCCgGGCCCCGCGUCGcccuccaCCGC-CGC-CGc -3'
miRNA:   3'- -GG-CUGGGGCGUAGCa------GGCGuGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 193804 0.7 0.645129
Target:  5'- gCCGGCgCCCGC-UCGUCUG-GCGC-CGa -3'
miRNA:   3'- -GGCUG-GGGCGuAGCAGGCgUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 193765 0.81 0.180314
Target:  5'- gCCGGCCCCGC-UCGcUCGCcCGCUCGa -3'
miRNA:   3'- -GGCUGGGGCGuAGCaGGCGuGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 193415 0.66 0.84933
Target:  5'- uCCGccGCCgCCGCccGUCGUCCagccguccgGCACGC-CGc -3'
miRNA:   3'- -GGC--UGG-GGCG--UAGCAGG---------CGUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 193379 0.78 0.272869
Target:  5'- gCCGcgcuCCUCGcCGUCGUCCGCcucGCGCUCGc -3'
miRNA:   3'- -GGCu---GGGGC-GUAGCAGGCG---UGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 192637 0.73 0.449004
Target:  5'- gCGGCCgcuccagCCGCGcCG-CCGCGCGCUCGc -3'
miRNA:   3'- gGCUGG-------GGCGUaGCaGGCGUGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 192288 0.69 0.721291
Target:  5'- gCGACCCggagaccagcuuCGCGcUCGUCCGC--GCUCGc -3'
miRNA:   3'- gGCUGGG------------GCGU-AGCAGGCGugCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 191746 0.73 0.462011
Target:  5'- uCCGAggacucggacagagcCCCCucggaAUCGUCCGCgACGCUCGa -3'
miRNA:   3'- -GGCU---------------GGGGcg---UAGCAGGCG-UGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 190256 0.71 0.606597
Target:  5'- cCCGACUCCGCuUCcagUCGCACGCgcCGg -3'
miRNA:   3'- -GGCUGGGGCGuAGca-GGCGUGCGa-GC- -5'
10791 3' -59.6 NC_002794.1 + 190107 0.7 0.625855
Target:  5'- aCG-CCCCGcCGUCcgcgccgaagcgGUCCGCGCGC-CGa -3'
miRNA:   3'- gGCuGGGGC-GUAG------------CAGGCGUGCGaGC- -5'
10791 3' -59.6 NC_002794.1 + 189902 0.67 0.809913
Target:  5'- gCCGucagcGCCgCCGCG-CGaCCGCcCGCUCGc -3'
miRNA:   3'- -GGC-----UGG-GGCGUaGCaGGCGuGCGAGC- -5'
10791 3' -59.6 NC_002794.1 + 188796 0.7 0.645129
Target:  5'- gCCGGCCCCGCcgagcgcCGUCCagGCGCaCUUGa -3'
miRNA:   3'- -GGCUGGGGCGua-----GCAGG--CGUGcGAGC- -5'
10791 3' -59.6 NC_002794.1 + 187932 0.67 0.793099
Target:  5'- gCGACCgUCGCGUcacgCGUgCGCGCGCgagcgCGg -3'
miRNA:   3'- gGCUGG-GGCGUA----GCAgGCGUGCGa----GC- -5'
10791 3' -59.6 NC_002794.1 + 187438 0.69 0.702507
Target:  5'- -aGGCCagCCGCGcCGUCUGCcgcCGCUCGg -3'
miRNA:   3'- ggCUGG--GGCGUaGCAGGCGu--GCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.