miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10791 5' -54.5 NC_002794.1 + 127162 0.66 0.973585
Target:  5'- aUCAACCACCUccacccucgccgcaGUCGUcGCcgCGGCCGc -3'
miRNA:   3'- gAGUUGGUGGAc-------------CAGUA-CGa-GCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 52917 0.66 0.972511
Target:  5'- gUC-GCCGCCgccGUC--GCUCGGCCGg -3'
miRNA:   3'- gAGuUGGUGGac-CAGuaCGAGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 27390 0.66 0.972511
Target:  5'- gUCGACCgACC-GGaugaccGCUCGACCGg -3'
miRNA:   3'- gAGUUGG-UGGaCCagua--CGAGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 85222 0.66 0.972511
Target:  5'- aCUCGGCC-CCgc-UCG-GCUCGACCa -3'
miRNA:   3'- -GAGUUGGuGGaccAGUaCGAGCUGGc -5'
10791 5' -54.5 NC_002794.1 + 12932 0.66 0.972511
Target:  5'- gUCGACgACCUGGcggacuUCGUGgCgUUGGCCGu -3'
miRNA:   3'- gAGUUGgUGGACC------AGUAC-G-AGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 115819 0.66 0.970842
Target:  5'- gCUCuuCCGCCUGGaUCGgcggggcccggcggGCUCgGGCCu -3'
miRNA:   3'- -GAGuuGGUGGACC-AGUa-------------CGAG-CUGGc -5'
10791 5' -54.5 NC_002794.1 + 58825 0.66 0.970842
Target:  5'- cCUCAACCGCCUgccgcgcgaGGacgccgacgugcagcUCGUcGC-CGACCGg -3'
miRNA:   3'- -GAGUUGGUGGA---------CC---------------AGUA-CGaGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 100347 0.66 0.969689
Target:  5'- uCUCGACCGCCgagcuggaGGUgGacUGCgaggUGGCCGa -3'
miRNA:   3'- -GAGUUGGUGGa-------CCAgU--ACGa---GCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 39528 0.66 0.969689
Target:  5'- uUCGgcuACCACCUGGggcUGCUgugCGGCCu -3'
miRNA:   3'- gAGU---UGGUGGACCaguACGA---GCUGGc -5'
10791 5' -54.5 NC_002794.1 + 98321 0.66 0.966666
Target:  5'- aUCAACC-CCUcGUcCAUGCUgaCGGCCa -3'
miRNA:   3'- gAGUUGGuGGAcCA-GUACGA--GCUGGc -5'
10791 5' -54.5 NC_002794.1 + 191799 0.66 0.963437
Target:  5'- gCUCGACCGCCc------GCUCGGCCGc -3'
miRNA:   3'- -GAGUUGGUGGaccaguaCGAGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 151738 0.66 0.963437
Target:  5'- gUCGGCCGCC-GGUCGccucgcgcGCUCGuCCu -3'
miRNA:   3'- gAGUUGGUGGaCCAGUa-------CGAGCuGGc -5'
10791 5' -54.5 NC_002794.1 + 130379 0.66 0.963437
Target:  5'- cCUCAaccgcugagGCCGCCUGGcugUCGgacGCcgCGACCa -3'
miRNA:   3'- -GAGU---------UGGUGGACC---AGUa--CGa-GCUGGc -5'
10791 5' -54.5 NC_002794.1 + 18794 0.66 0.962085
Target:  5'- aCUCGACgGCCccgccggccaacgGGUCGgcgacCUCGGCCGg -3'
miRNA:   3'- -GAGUUGgUGGa------------CCAGUac---GAGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 79561 0.66 0.959639
Target:  5'- cCUCc-CCGuCCUGGUuccucggCGUGUUCGGCCa -3'
miRNA:   3'- -GAGuuGGU-GGACCA-------GUACGAGCUGGc -5'
10791 5' -54.5 NC_002794.1 + 70891 0.67 0.956336
Target:  5'- cCUCGAgCGCCaGGUCGgugaGCacgUCGGCCa -3'
miRNA:   3'- -GAGUUgGUGGaCCAGUa---CG---AGCUGGc -5'
10791 5' -54.5 NC_002794.1 + 31980 0.67 0.956336
Target:  5'- uCUCGAgCGCCUcGGUC-UGCgugggCGAgCCGa -3'
miRNA:   3'- -GAGUUgGUGGA-CCAGuACGa----GCU-GGC- -5'
10791 5' -54.5 NC_002794.1 + 142136 0.67 0.956336
Target:  5'- -cCGACCGCCgGGUCAcgGCggaggCGGCgGu -3'
miRNA:   3'- gaGUUGGUGGaCCAGUa-CGa----GCUGgC- -5'
10791 5' -54.5 NC_002794.1 + 23310 0.67 0.94835
Target:  5'- --gAGCCACCcgGGUCcccaAUGUUCGACgGu -3'
miRNA:   3'- gagUUGGUGGa-CCAG----UACGAGCUGgC- -5'
10791 5' -54.5 NC_002794.1 + 15081 0.67 0.94835
Target:  5'- -gCGACUACCgacagcGGUguUGCUCGAucCCGa -3'
miRNA:   3'- gaGUUGGUGGa-----CCAguACGAGCU--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.