Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10791 | 5' | -54.5 | NC_002794.1 | + | 153667 | 0.67 | 0.94835 |
Target: 5'- -cCGGCCGCC-GGUUGUgagGCUCGACgCGc -3' miRNA: 3'- gaGUUGGUGGaCCAGUA---CGAGCUG-GC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 78875 | 0.67 | 0.944016 |
Target: 5'- gCUCAGCCGCCUcGaCcucCUCGGCCGg -3' miRNA: 3'- -GAGUUGGUGGAcCaGuacGAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 119371 | 0.67 | 0.939451 |
Target: 5'- cCUCGuUCGCgUGGUCGaGCUgGGCCa -3' miRNA: 3'- -GAGUuGGUGgACCAGUaCGAgCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 126449 | 0.67 | 0.939451 |
Target: 5'- cCUCGGCC-CUgGGUCcgGCUCG-UCGg -3' miRNA: 3'- -GAGUUGGuGGaCCAGuaCGAGCuGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 79025 | 0.68 | 0.934654 |
Target: 5'- cCUCGGCCGCCUucugCcgGCcCGGCCGc -3' miRNA: 3'- -GAGUUGGUGGAcca-GuaCGaGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 49476 | 0.68 | 0.934654 |
Target: 5'- -cCGGCCGCCgcgGGUC-UG-UCGACCu -3' miRNA: 3'- gaGUUGGUGGa--CCAGuACgAGCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 144948 | 0.68 | 0.924893 |
Target: 5'- gCUgGACCACCUGuGUCuccucgGCgccucgacggugucgCGACCGg -3' miRNA: 3'- -GAgUUGGUGGAC-CAGua----CGa--------------GCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 128554 | 0.68 | 0.924356 |
Target: 5'- -cCGuCCugCUGGUCAUcgcGCUCGGCg- -3' miRNA: 3'- gaGUuGGugGACCAGUA---CGAGCUGgc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 62191 | 0.68 | 0.918855 |
Target: 5'- gCUCAuCC-CC--GUCcgGCUCGACCGg -3' miRNA: 3'- -GAGUuGGuGGacCAGuaCGAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 12689 | 0.68 | 0.91312 |
Target: 5'- uCUCAG-CGCCUGuUCAUG-UCGGCCGu -3' miRNA: 3'- -GAGUUgGUGGACcAGUACgAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 62258 | 0.68 | 0.907152 |
Target: 5'- uUCGcGCUgcGCCUGGUCAagccggaGCUCGGCCu -3' miRNA: 3'- gAGU-UGG--UGGACCAGUa------CGAGCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 133748 | 0.69 | 0.900954 |
Target: 5'- uUCggUCGCCUgcagGGUCccGaCUCGACCGc -3' miRNA: 3'- gAGuuGGUGGA----CCAGuaC-GAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 61971 | 0.69 | 0.900321 |
Target: 5'- -gCGGCCGCCUgcugcaGGUCAaGCUgcacuucCGACCGg -3' miRNA: 3'- gaGUUGGUGGA------CCAGUaCGA-------GCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 62351 | 0.69 | 0.894527 |
Target: 5'- -cCGGCgCACCUGGUCucGUUgGACCGc -3' miRNA: 3'- gaGUUG-GUGGACCAGuaCGAgCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 73995 | 0.7 | 0.832094 |
Target: 5'- -aCGACgACCUGGUCcccacgcugcgccUGUUCGGCCGc -3' miRNA: 3'- gaGUUGgUGGACCAGu------------ACGAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 12982 | 0.71 | 0.801263 |
Target: 5'- uUCuuCCuCCUGGcCGUGCUCGugCu -3' miRNA: 3'- gAGuuGGuGGACCaGUACGAGCugGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 111632 | 0.71 | 0.78327 |
Target: 5'- -gCGGCCGCCgccGGUCggGCgccgCGGCCGc -3' miRNA: 3'- gaGUUGGUGGa--CCAGuaCGa---GCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 179447 | 0.72 | 0.733197 |
Target: 5'- gUgGACCACCgccucGGUCGUGauguucagcgcgcaCUCGACCGg -3' miRNA: 3'- gAgUUGGUGGa----CCAGUAC--------------GAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 78678 | 0.73 | 0.676684 |
Target: 5'- cCUCGGCCGCC-GGccgCAUGUgCGGCCGa -3' miRNA: 3'- -GAGUUGGUGGaCCa--GUACGaGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 81045 | 1.08 | 0.00598 |
Target: 5'- cCUCAACCACCUGGUCAUGCUCGACCGc -3' miRNA: 3'- -GAGUUGGUGGACCAGUACGAGCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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