miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10791 5' -54.5 NC_002794.1 + 12689 0.68 0.91312
Target:  5'- uCUCAG-CGCCUGuUCAUG-UCGGCCGu -3'
miRNA:   3'- -GAGUUgGUGGACcAGUACgAGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 12932 0.66 0.972511
Target:  5'- gUCGACgACCUGGcggacuUCGUGgCgUUGGCCGu -3'
miRNA:   3'- gAGUUGgUGGACC------AGUAC-G-AGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 12982 0.71 0.801263
Target:  5'- uUCuuCCuCCUGGcCGUGCUCGugCu -3'
miRNA:   3'- gAGuuGGuGGACCaGUACGAGCugGc -5'
10791 5' -54.5 NC_002794.1 + 15081 0.67 0.94835
Target:  5'- -gCGACUACCgacagcGGUguUGCUCGAucCCGa -3'
miRNA:   3'- gaGUUGGUGGa-----CCAguACGAGCU--GGC- -5'
10791 5' -54.5 NC_002794.1 + 18794 0.66 0.962085
Target:  5'- aCUCGACgGCCccgccggccaacgGGUCGgcgacCUCGGCCGg -3'
miRNA:   3'- -GAGUUGgUGGa------------CCAGUac---GAGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 23310 0.67 0.94835
Target:  5'- --gAGCCACCcgGGUCcccaAUGUUCGACgGu -3'
miRNA:   3'- gagUUGGUGGa-CCAG----UACGAGCUGgC- -5'
10791 5' -54.5 NC_002794.1 + 27390 0.66 0.972511
Target:  5'- gUCGACCgACC-GGaugaccGCUCGACCGg -3'
miRNA:   3'- gAGUUGG-UGGaCCagua--CGAGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 31980 0.67 0.956336
Target:  5'- uCUCGAgCGCCUcGGUC-UGCgugggCGAgCCGa -3'
miRNA:   3'- -GAGUUgGUGGA-CCAGuACGa----GCU-GGC- -5'
10791 5' -54.5 NC_002794.1 + 39528 0.66 0.969689
Target:  5'- uUCGgcuACCACCUGGggcUGCUgugCGGCCu -3'
miRNA:   3'- gAGU---UGGUGGACCaguACGA---GCUGGc -5'
10791 5' -54.5 NC_002794.1 + 49476 0.68 0.934654
Target:  5'- -cCGGCCGCCgcgGGUC-UG-UCGACCu -3'
miRNA:   3'- gaGUUGGUGGa--CCAGuACgAGCUGGc -5'
10791 5' -54.5 NC_002794.1 + 52917 0.66 0.972511
Target:  5'- gUC-GCCGCCgccGUC--GCUCGGCCGg -3'
miRNA:   3'- gAGuUGGUGGac-CAGuaCGAGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 58825 0.66 0.970842
Target:  5'- cCUCAACCGCCUgccgcgcgaGGacgccgacgugcagcUCGUcGC-CGACCGg -3'
miRNA:   3'- -GAGUUGGUGGA---------CC---------------AGUA-CGaGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 61971 0.69 0.900321
Target:  5'- -gCGGCCGCCUgcugcaGGUCAaGCUgcacuucCGACCGg -3'
miRNA:   3'- gaGUUGGUGGA------CCAGUaCGA-------GCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 62191 0.68 0.918855
Target:  5'- gCUCAuCC-CC--GUCcgGCUCGACCGg -3'
miRNA:   3'- -GAGUuGGuGGacCAGuaCGAGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 62258 0.68 0.907152
Target:  5'- uUCGcGCUgcGCCUGGUCAagccggaGCUCGGCCu -3'
miRNA:   3'- gAGU-UGG--UGGACCAGUa------CGAGCUGGc -5'
10791 5' -54.5 NC_002794.1 + 62351 0.69 0.894527
Target:  5'- -cCGGCgCACCUGGUCucGUUgGACCGc -3'
miRNA:   3'- gaGUUG-GUGGACCAGuaCGAgCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 70891 0.67 0.956336
Target:  5'- cCUCGAgCGCCaGGUCGgugaGCacgUCGGCCa -3'
miRNA:   3'- -GAGUUgGUGGaCCAGUa---CG---AGCUGGc -5'
10791 5' -54.5 NC_002794.1 + 73995 0.7 0.832094
Target:  5'- -aCGACgACCUGGUCcccacgcugcgccUGUUCGGCCGc -3'
miRNA:   3'- gaGUUGgUGGACCAGu------------ACGAGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 78678 0.73 0.676684
Target:  5'- cCUCGGCCGCC-GGccgCAUGUgCGGCCGa -3'
miRNA:   3'- -GAGUUGGUGGaCCa--GUACGaGCUGGC- -5'
10791 5' -54.5 NC_002794.1 + 78875 0.67 0.944016
Target:  5'- gCUCAGCCGCCUcGaCcucCUCGGCCGg -3'
miRNA:   3'- -GAGUUGGUGGAcCaGuacGAGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.