Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10791 | 5' | -54.5 | NC_002794.1 | + | 191799 | 0.66 | 0.963437 |
Target: 5'- gCUCGACCGCCc------GCUCGGCCGc -3' miRNA: 3'- -GAGUUGGUGGaccaguaCGAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 179447 | 0.72 | 0.733197 |
Target: 5'- gUgGACCACCgccucGGUCGUGauguucagcgcgcaCUCGACCGg -3' miRNA: 3'- gAgUUGGUGGa----CCAGUAC--------------GAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 153667 | 0.67 | 0.94835 |
Target: 5'- -cCGGCCGCC-GGUUGUgagGCUCGACgCGc -3' miRNA: 3'- gaGUUGGUGGaCCAGUA---CGAGCUG-GC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 151738 | 0.66 | 0.963437 |
Target: 5'- gUCGGCCGCC-GGUCGccucgcgcGCUCGuCCu -3' miRNA: 3'- gAGUUGGUGGaCCAGUa-------CGAGCuGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 144948 | 0.68 | 0.924893 |
Target: 5'- gCUgGACCACCUGuGUCuccucgGCgccucgacggugucgCGACCGg -3' miRNA: 3'- -GAgUUGGUGGAC-CAGua----CGa--------------GCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 142136 | 0.67 | 0.956336 |
Target: 5'- -cCGACCGCCgGGUCAcgGCggaggCGGCgGu -3' miRNA: 3'- gaGUUGGUGGaCCAGUa-CGa----GCUGgC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 133748 | 0.69 | 0.900954 |
Target: 5'- uUCggUCGCCUgcagGGUCccGaCUCGACCGc -3' miRNA: 3'- gAGuuGGUGGA----CCAGuaC-GAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 130379 | 0.66 | 0.963437 |
Target: 5'- cCUCAaccgcugagGCCGCCUGGcugUCGgacGCcgCGACCa -3' miRNA: 3'- -GAGU---------UGGUGGACC---AGUa--CGa-GCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 128554 | 0.68 | 0.924356 |
Target: 5'- -cCGuCCugCUGGUCAUcgcGCUCGGCg- -3' miRNA: 3'- gaGUuGGugGACCAGUA---CGAGCUGgc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 127162 | 0.66 | 0.973585 |
Target: 5'- aUCAACCACCUccacccucgccgcaGUCGUcGCcgCGGCCGc -3' miRNA: 3'- gAGUUGGUGGAc-------------CAGUA-CGa-GCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 126449 | 0.67 | 0.939451 |
Target: 5'- cCUCGGCC-CUgGGUCcgGCUCG-UCGg -3' miRNA: 3'- -GAGUUGGuGGaCCAGuaCGAGCuGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 119371 | 0.67 | 0.939451 |
Target: 5'- cCUCGuUCGCgUGGUCGaGCUgGGCCa -3' miRNA: 3'- -GAGUuGGUGgACCAGUaCGAgCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 115819 | 0.66 | 0.970842 |
Target: 5'- gCUCuuCCGCCUGGaUCGgcggggcccggcggGCUCgGGCCu -3' miRNA: 3'- -GAGuuGGUGGACC-AGUa-------------CGAG-CUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 111632 | 0.71 | 0.78327 |
Target: 5'- -gCGGCCGCCgccGGUCggGCgccgCGGCCGc -3' miRNA: 3'- gaGUUGGUGGa--CCAGuaCGa---GCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 100347 | 0.66 | 0.969689 |
Target: 5'- uCUCGACCGCCgagcuggaGGUgGacUGCgaggUGGCCGa -3' miRNA: 3'- -GAGUUGGUGGa-------CCAgU--ACGa---GCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 98321 | 0.66 | 0.966666 |
Target: 5'- aUCAACC-CCUcGUcCAUGCUgaCGGCCa -3' miRNA: 3'- gAGUUGGuGGAcCA-GUACGA--GCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 85222 | 0.66 | 0.972511 |
Target: 5'- aCUCGGCC-CCgc-UCG-GCUCGACCa -3' miRNA: 3'- -GAGUUGGuGGaccAGUaCGAGCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 81045 | 1.08 | 0.00598 |
Target: 5'- cCUCAACCACCUGGUCAUGCUCGACCGc -3' miRNA: 3'- -GAGUUGGUGGACCAGUACGAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 79561 | 0.66 | 0.959639 |
Target: 5'- cCUCc-CCGuCCUGGUuccucggCGUGUUCGGCCa -3' miRNA: 3'- -GAGuuGGU-GGACCA-------GUACGAGCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 79025 | 0.68 | 0.934654 |
Target: 5'- cCUCGGCCGCCUucugCcgGCcCGGCCGc -3' miRNA: 3'- -GAGUUGGUGGAcca-GuaCGaGCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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