Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10791 | 5' | -54.5 | NC_002794.1 | + | 179447 | 0.72 | 0.733197 |
Target: 5'- gUgGACCACCgccucGGUCGUGauguucagcgcgcaCUCGACCGg -3' miRNA: 3'- gAgUUGGUGGa----CCAGUAC--------------GAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 130379 | 0.66 | 0.963437 |
Target: 5'- cCUCAaccgcugagGCCGCCUGGcugUCGgacGCcgCGACCa -3' miRNA: 3'- -GAGU---------UGGUGGACC---AGUa--CGa-GCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 18794 | 0.66 | 0.962085 |
Target: 5'- aCUCGACgGCCccgccggccaacgGGUCGgcgacCUCGGCCGg -3' miRNA: 3'- -GAGUUGgUGGa------------CCAGUac---GAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 79561 | 0.66 | 0.959639 |
Target: 5'- cCUCc-CCGuCCUGGUuccucggCGUGUUCGGCCa -3' miRNA: 3'- -GAGuuGGU-GGACCA-------GUACGAGCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 142136 | 0.67 | 0.956336 |
Target: 5'- -cCGACCGCCgGGUCAcgGCggaggCGGCgGu -3' miRNA: 3'- gaGUUGGUGGaCCAGUa-CGa----GCUGgC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 31980 | 0.67 | 0.956336 |
Target: 5'- uCUCGAgCGCCUcGGUC-UGCgugggCGAgCCGa -3' miRNA: 3'- -GAGUUgGUGGA-CCAGuACGa----GCU-GGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 70891 | 0.67 | 0.956336 |
Target: 5'- cCUCGAgCGCCaGGUCGgugaGCacgUCGGCCa -3' miRNA: 3'- -GAGUUgGUGGaCCAGUa---CG---AGCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 153667 | 0.67 | 0.94835 |
Target: 5'- -cCGGCCGCC-GGUUGUgagGCUCGACgCGc -3' miRNA: 3'- gaGUUGGUGGaCCAGUA---CGAGCUG-GC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 23310 | 0.67 | 0.94835 |
Target: 5'- --gAGCCACCcgGGUCcccaAUGUUCGACgGu -3' miRNA: 3'- gagUUGGUGGa-CCAG----UACGAGCUGgC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 151738 | 0.66 | 0.963437 |
Target: 5'- gUCGGCCGCC-GGUCGccucgcgcGCUCGuCCu -3' miRNA: 3'- gAGUUGGUGGaCCAGUa-------CGAGCuGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 98321 | 0.66 | 0.966666 |
Target: 5'- aUCAACC-CCUcGUcCAUGCUgaCGGCCa -3' miRNA: 3'- gAGUUGGuGGAcCA-GUACGA--GCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 191799 | 0.66 | 0.963437 |
Target: 5'- gCUCGACCGCCc------GCUCGGCCGc -3' miRNA: 3'- -GAGUUGGUGGaccaguaCGAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 52917 | 0.66 | 0.972511 |
Target: 5'- gUC-GCCGCCgccGUC--GCUCGGCCGg -3' miRNA: 3'- gAGuUGGUGGac-CAGuaCGAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 27390 | 0.66 | 0.972511 |
Target: 5'- gUCGACCgACC-GGaugaccGCUCGACCGg -3' miRNA: 3'- gAGUUGG-UGGaCCagua--CGAGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 85222 | 0.66 | 0.972511 |
Target: 5'- aCUCGGCC-CCgc-UCG-GCUCGACCa -3' miRNA: 3'- -GAGUUGGuGGaccAGUaCGAGCUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 12932 | 0.66 | 0.972511 |
Target: 5'- gUCGACgACCUGGcggacuUCGUGgCgUUGGCCGu -3' miRNA: 3'- gAGUUGgUGGACC------AGUAC-G-AGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 58825 | 0.66 | 0.970842 |
Target: 5'- cCUCAACCGCCUgccgcgcgaGGacgccgacgugcagcUCGUcGC-CGACCGg -3' miRNA: 3'- -GAGUUGGUGGA---------CC---------------AGUA-CGaGCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 100347 | 0.66 | 0.969689 |
Target: 5'- uCUCGACCGCCgagcuggaGGUgGacUGCgaggUGGCCGa -3' miRNA: 3'- -GAGUUGGUGGa-------CCAgU--ACGa---GCUGGC- -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 115819 | 0.66 | 0.970842 |
Target: 5'- gCUCuuCCGCCUGGaUCGgcggggcccggcggGCUCgGGCCu -3' miRNA: 3'- -GAGuuGGUGGACC-AGUa-------------CGAG-CUGGc -5' |
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10791 | 5' | -54.5 | NC_002794.1 | + | 39528 | 0.66 | 0.969689 |
Target: 5'- uUCGgcuACCACCUGGggcUGCUgugCGGCCu -3' miRNA: 3'- gAGU---UGGUGGACCaguACGA---GCUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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