miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 3' -55.3 NC_002794.1 + 160334 0.66 0.969268
Target:  5'- cGCgGAUGGGCGAcGAAUUUGAcCGcGGCg -3'
miRNA:   3'- cCGaCUGCCUGCU-CUUGGACU-GC-CUG- -5'
10792 3' -55.3 NC_002794.1 + 87088 0.66 0.969268
Target:  5'- aGGCcgGGCgGGugGGGGugCaGGcCGGGCg -3'
miRNA:   3'- -CCGa-CUG-CCugCUCUugGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 87130 0.66 0.969268
Target:  5'- aGGCcgGGCgGGugGGGGugCaGGcCGGGCg -3'
miRNA:   3'- -CCGa-CUG-CCugCUCUugGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 87172 0.66 0.969268
Target:  5'- aGGCcgGGCgGGugGGGGugCaGGcCGGGCg -3'
miRNA:   3'- -CCGa-CUG-CCugCUCUugGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 87214 0.66 0.969268
Target:  5'- aGGCcgGGCgGGugGGGGugCaGGcCGGGCg -3'
miRNA:   3'- -CCGa-CUG-CCugCUCUugGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 87256 0.66 0.969268
Target:  5'- aGGCcgGGCgGGugGGGGugCaGGcCGGGCg -3'
miRNA:   3'- -CCGa-CUG-CCugCUCUugGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 146906 0.66 0.969268
Target:  5'- aGGCgcuCGGgcGCGGGGAUCggccgGACGGAg -3'
miRNA:   3'- -CCGacuGCC--UGCUCUUGGa----CUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 178044 0.66 0.969268
Target:  5'- cGGCUGACgGGugGAG-ACUggaagagcGAgGGAUc -3'
miRNA:   3'- -CCGACUG-CCugCUCuUGGa-------CUgCCUG- -5'
10792 3' -55.3 NC_002794.1 + 102645 0.66 0.969268
Target:  5'- cGGCUGGCGGcGCGcucggaGGAGCUgccGAgcgUGGGCg -3'
miRNA:   3'- -CCGACUGCC-UGC------UCUUGGa--CU---GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 95780 0.66 0.969268
Target:  5'- cGGC-GGCcgGGGCGAGAGgCgcGGCGGAg -3'
miRNA:   3'- -CCGaCUG--CCUGCUCUUgGa-CUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 112356 0.66 0.969268
Target:  5'- cGGC-GGCgGGGCGGGGAgCUGcUGGAa -3'
miRNA:   3'- -CCGaCUG-CCUGCUCUUgGACuGCCUg -5'
10792 3' -55.3 NC_002794.1 + 120116 0.66 0.969268
Target:  5'- cGCgUGACGcgcgcGACGGcGACCgggGACGGGCc -3'
miRNA:   3'- cCG-ACUGC-----CUGCUcUUGGa--CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 138733 0.66 0.968975
Target:  5'- cGGCUcGACGGGguccccggcccucCGGGGGCCgagucgcGGCGGuCg -3'
miRNA:   3'- -CCGA-CUGCCU-------------GCUCUUGGa------CUGCCuG- -5'
10792 3' -55.3 NC_002794.1 + 104499 0.66 0.966255
Target:  5'- cGGCcgGGuCGGGCGAGAACgggCUGaggcGCGGGu -3'
miRNA:   3'- -CCGa-CU-GCCUGCUCUUG---GAC----UGCCUg -5'
10792 3' -55.3 NC_002794.1 + 154292 0.66 0.966255
Target:  5'- cGGCUcGACGGuCGAaucGAGCCUccuCGGGa -3'
miRNA:   3'- -CCGA-CUGCCuGCU---CUUGGAcu-GCCUg -5'
10792 3' -55.3 NC_002794.1 + 40062 0.66 0.966255
Target:  5'- cGCUGAcuCGGGgGAGGgaaACCggGGCGGGg -3'
miRNA:   3'- cCGACU--GCCUgCUCU---UGGa-CUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 51257 0.66 0.965313
Target:  5'- aGGCgugggGGCGGGcCGGGAggcaggcgcggcccGCCcGAaCGGGCa -3'
miRNA:   3'- -CCGa----CUGCCU-GCUCU--------------UGGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 134082 0.66 0.963041
Target:  5'- -uCUGGuCGGACGAcucGGuCCUGcCGGACg -3'
miRNA:   3'- ccGACU-GCCUGCU---CUuGGACuGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 141768 0.66 0.963041
Target:  5'- cGGUUcGAUuccGACGAcGAGCCguccGACGGGCg -3'
miRNA:   3'- -CCGA-CUGc--CUGCU-CUUGGa---CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 126046 0.66 0.963041
Target:  5'- cGGcCUGGCGGuCG-GAcuggucgcgcGCCUGGCcuGGACc -3'
miRNA:   3'- -CC-GACUGCCuGCuCU----------UGGACUG--CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.