miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 3' -55.3 NC_002794.1 + 80588 1.12 0.003102
Target:  5'- gGGCUGACGGACGAGAACCUGACGGACg -3'
miRNA:   3'- -CCGACUGCCUGCUCUUGGACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 138969 0.82 0.253663
Target:  5'- cGC-GGCGGACGGGuugGCCUGGCGGGCc -3'
miRNA:   3'- cCGaCUGCCUGCUCu--UGGACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 94225 0.81 0.272011
Target:  5'- cGGC-GACGGGCGGGcgGGCCggUGACGGACa -3'
miRNA:   3'- -CCGaCUGCCUGCUC--UUGG--ACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 92315 0.8 0.326116
Target:  5'- gGGCgcgGGCGG-CGGGGGCCcgGGCGGGCg -3'
miRNA:   3'- -CCGa--CUGCCuGCUCUUGGa-CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 102700 0.78 0.396042
Target:  5'- uGCUGACGGcCGGGccGCCgGACGGGCg -3'
miRNA:   3'- cCGACUGCCuGCUCu-UGGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 102181 0.78 0.421404
Target:  5'- uGGCgcGCGG-CGAGGACCUGGCGGcCg -3'
miRNA:   3'- -CCGacUGCCuGCUCUUGGACUGCCuG- -5'
10792 3' -55.3 NC_002794.1 + 182332 0.77 0.474924
Target:  5'- gGGCgGGCGGGCGAGcgGACg-GGCGGGCg -3'
miRNA:   3'- -CCGaCUGCCUGCUC--UUGgaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 53808 0.75 0.551086
Target:  5'- cGGCgggagccucGGCGGgagccucgGCGGGAGCCUcGACGGGCg -3'
miRNA:   3'- -CCGa--------CUGCC--------UGCUCUUGGA-CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 145565 0.75 0.570756
Target:  5'- cGGUUcGCGGACGAGcGCC-GACGGAg -3'
miRNA:   3'- -CCGAcUGCCUGCUCuUGGaCUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 125682 0.73 0.670534
Target:  5'- uGGCUGACGGGCGAcguguugcuGcGCgUGACGGu- -3'
miRNA:   3'- -CCGACUGCCUGCU---------CuUGgACUGCCug -5'
10792 3' -55.3 NC_002794.1 + 38589 0.73 0.690375
Target:  5'- cGGCcGccuccuccCGGACGAGAgGCCgGACGGGCg -3'
miRNA:   3'- -CCGaCu-------GCCUGCUCU-UGGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 7184 0.73 0.700231
Target:  5'- gGGCUGAgGGGgGGGGGCUUauuucaGugGGGCg -3'
miRNA:   3'- -CCGACUgCCUgCUCUUGGA------CugCCUG- -5'
10792 3' -55.3 NC_002794.1 + 107061 0.71 0.76628
Target:  5'- cGGCgGGCGcGGCGccgccggcaugucGGAGCC-GACGGGCg -3'
miRNA:   3'- -CCGaCUGC-CUGC-------------UCUUGGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 137619 0.71 0.77638
Target:  5'- cGGC-GGCGGugcccACGAcGAcguCCUGGCGGGCg -3'
miRNA:   3'- -CCGaCUGCC-----UGCU-CUu--GGACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 91802 0.71 0.785433
Target:  5'- -uCUGcaACGGGCuGAGuGCCUGACGGAg -3'
miRNA:   3'- ccGAC--UGCCUG-CUCuUGGACUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 136729 0.71 0.794354
Target:  5'- cGGCguccaGGCGGuCGAGGuucgucuccccgAgCUGGCGGACg -3'
miRNA:   3'- -CCGa----CUGCCuGCUCU------------UgGACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 155635 0.71 0.803135
Target:  5'- uGGCcaGGCGGAUGAuGggUCUGAUgaGGGCa -3'
miRNA:   3'- -CCGa-CUGCCUGCU-CuuGGACUG--CCUG- -5'
10792 3' -55.3 NC_002794.1 + 121551 0.7 0.810911
Target:  5'- cGGUgacGACGaGACGAGcuucgggaucuucAGCgUGACGGGCg -3'
miRNA:   3'- -CCGa--CUGC-CUGCUC-------------UUGgACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 117999 0.7 0.820245
Target:  5'- gGGCUGccGCGGcAgGAGcACCUGGCaGGCg -3'
miRNA:   3'- -CCGAC--UGCC-UgCUCuUGGACUGcCUG- -5'
10792 3' -55.3 NC_002794.1 + 182296 0.7 0.828558
Target:  5'- gGGCgggugGACGGGCaGAcGGGCg-GACGGGCg -3'
miRNA:   3'- -CCGa----CUGCCUG-CU-CUUGgaCUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.