miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 3' -55.3 NC_002794.1 + 136097 0.7 0.828558
Target:  5'- aGGCguaGACGucGGCGuccuGcACCUGGCGGGCg -3'
miRNA:   3'- -CCGa--CUGC--CUGCu---CuUGGACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 33566 0.7 0.844664
Target:  5'- uGCUGACgaucgaccaGGugGuGGACCgccugcGGCGGACg -3'
miRNA:   3'- cCGACUG---------CCugCuCUUGGa-----CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 76790 0.7 0.844664
Target:  5'- aGCcgGGCGGGCGAGcggcGACCaccgGAcCGGACg -3'
miRNA:   3'- cCGa-CUGCCUGCUC----UUGGa---CU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 94478 0.7 0.844664
Target:  5'- cGGCggcGGCGGACGcggccgcGGGCCgUGGCGGGg -3'
miRNA:   3'- -CCGa--CUGCCUGCu------CUUGG-ACUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 149835 0.7 0.844664
Target:  5'- ---gGACGGGCGGGGACgagGACGGGg -3'
miRNA:   3'- ccgaCUGCCUGCUCUUGga-CUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 79340 0.69 0.860032
Target:  5'- gGGCcgcccGAuCGcGGCGcAGAGCCUGuCGGACa -3'
miRNA:   3'- -CCGa----CU-GC-CUGC-UCUUGGACuGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 153799 0.69 0.860032
Target:  5'- cGGaUGA-GGACGAGAGCCggccCGGACc -3'
miRNA:   3'- -CCgACUgCCUGCUCUUGGacu-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 106358 0.69 0.866693
Target:  5'- cGGCgGGCGGGCgccgguucgcgcgGAGGGCagacGGCGGGCg -3'
miRNA:   3'- -CCGaCUGCCUG-------------CUCUUGga--CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 14042 0.69 0.867423
Target:  5'- uGCUGGCGauccuuacgccGACGGcGAuCCUGGCGGAg -3'
miRNA:   3'- cCGACUGC-----------CUGCU-CUuGGACUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 95149 0.69 0.867423
Target:  5'- gGGCUGuuGuGCGAucACCUGACGGuGCg -3'
miRNA:   3'- -CCGACugCcUGCUcuUGGACUGCC-UG- -5'
10792 3' -55.3 NC_002794.1 + 44347 0.69 0.874612
Target:  5'- cGGCgccGGCGaGAcCGAGAGCgC-GGCGGGCg -3'
miRNA:   3'- -CCGa--CUGC-CU-GCUCUUG-GaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 189939 0.69 0.874612
Target:  5'- cGGCcgccGAUGGACccgGAcGGACC-GACGGACg -3'
miRNA:   3'- -CCGa---CUGCCUG---CU-CUUGGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 91202 0.69 0.881594
Target:  5'- cGCUGuucGCGGACGGcGACgCgacGGCGGACg -3'
miRNA:   3'- cCGAC---UGCCUGCUcUUG-Ga--CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 31721 0.69 0.881594
Target:  5'- cGCggGAuccCGGAUGAG-ACCgGGCGGGCg -3'
miRNA:   3'- cCGa-CU---GCCUGCUCuUGGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 12923 0.69 0.881594
Target:  5'- cGcCUGGCcGuCGAcGACCUGGCGGACu -3'
miRNA:   3'- cC-GACUGcCuGCUcUUGGACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 6509 0.69 0.888363
Target:  5'- cGCgGugGGugGAGuccACCuguUGAUGGACc -3'
miRNA:   3'- cCGaCugCCugCUCu--UGG---ACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 91751 0.68 0.894916
Target:  5'- aGGUgccGGCGGGCG-GcACCgcgcagGACGGGCu -3'
miRNA:   3'- -CCGa--CUGCCUGCuCuUGGa-----CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 111501 0.68 0.894916
Target:  5'- gGGCca--GGACGAGAGaCCgGAgGGACg -3'
miRNA:   3'- -CCGacugCCUGCUCUU-GGaCUgCCUG- -5'
10792 3' -55.3 NC_002794.1 + 105939 0.68 0.899372
Target:  5'- gGGCUGgacgcgcuguacgaACGGcUGGGGGCCgccGCGGACg -3'
miRNA:   3'- -CCGAC--------------UGCCuGCUCUUGGac-UGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 126272 0.68 0.90372
Target:  5'- uGGCUGGCGGcgcugggcuugcuguGCGccgcGcGCCUGGCGGuGCa -3'
miRNA:   3'- -CCGACUGCC---------------UGCu---CuUGGACUGCC-UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.