miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 3' -55.3 NC_002794.1 + 169762 0.66 0.963041
Target:  5'- cGUUG--GGACGAGAGacCCUGugGcGACg -3'
miRNA:   3'- cCGACugCCUGCUCUU--GGACugC-CUG- -5'
10792 3' -55.3 NC_002794.1 + 60598 0.66 0.962708
Target:  5'- uGCUGGa-GGCGcagcagcaacagcAGAACCgGACGGGCg -3'
miRNA:   3'- cCGACUgcCUGC-------------UCUUGGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 83233 0.66 0.961013
Target:  5'- cGCUcGCGGACGAGAcgcucuccuACCucaaauuccaccacgUGcACGGACu -3'
miRNA:   3'- cCGAcUGCCUGCUCU---------UGG---------------AC-UGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 94014 0.66 0.959619
Target:  5'- cGGCgGGCcGGCGGGuuccGCC-GGCGGGCc -3'
miRNA:   3'- -CCGaCUGcCUGCUCu---UGGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 42584 0.66 0.959619
Target:  5'- cGCgGACGGAgGAGGGCgC-GGCGGcCg -3'
miRNA:   3'- cCGaCUGCCUgCUCUUG-GaCUGCCuG- -5'
10792 3' -55.3 NC_002794.1 + 47810 0.66 0.959619
Target:  5'- cGGCgaacaGGCGGACGAGg----GACGGGa -3'
miRNA:   3'- -CCGa----CUGCCUGCUCuuggaCUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 179632 0.66 0.959619
Target:  5'- gGGCgcugcGACGGAaagGAGAAgUCaGGCGGGCu -3'
miRNA:   3'- -CCGa----CUGCCUg--CUCUU-GGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 51754 0.66 0.955985
Target:  5'- cGGCaGACGGccaacAUGuu--CCUGGCGGGCu -3'
miRNA:   3'- -CCGaCUGCC-----UGCucuuGGACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 102513 0.66 0.952135
Target:  5'- cGGCUGGCGcGcgcGCGGGAcgACCUcuucuCGGGCc -3'
miRNA:   3'- -CCGACUGC-C---UGCUCU--UGGAcu---GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 122235 0.66 0.952135
Target:  5'- cGGCgc-CGGACGcugcugucGAGCCUGACGuACg -3'
miRNA:   3'- -CCGacuGCCUGCu-------CUUGGACUGCcUG- -5'
10792 3' -55.3 NC_002794.1 + 133455 0.66 0.952135
Target:  5'- cGCUGaucuuGCGGACGGGuAugCgGGCGcGACu -3'
miRNA:   3'- cCGAC-----UGCCUGCUC-UugGaCUGC-CUG- -5'
10792 3' -55.3 NC_002794.1 + 128095 0.66 0.952135
Target:  5'- cGGC-GACGGggagcucgACGGGGGgCUcGGCGGAUa -3'
miRNA:   3'- -CCGaCUGCC--------UGCUCUUgGA-CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 30010 0.66 0.952135
Target:  5'- cGGC-GACcGAcCGAGGACCUGGaGGAg -3'
miRNA:   3'- -CCGaCUGcCU-GCUCUUGGACUgCCUg -5'
10792 3' -55.3 NC_002794.1 + 94894 0.67 0.948065
Target:  5'- cGGCUGACGGuCGAcguggcGAcCCUGAacgaggUGGAg -3'
miRNA:   3'- -CCGACUGCCuGCU------CUuGGACU------GCCUg -5'
10792 3' -55.3 NC_002794.1 + 83051 0.67 0.948065
Target:  5'- cGGCgGA-GGACGAGcGCCcacccACGGGCg -3'
miRNA:   3'- -CCGaCUgCCUGCUCuUGGac---UGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 68136 0.67 0.948065
Target:  5'- uGCUGAUccGCGAGAcCCUGcacaacACGGGCg -3'
miRNA:   3'- cCGACUGccUGCUCUuGGAC------UGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 64700 0.67 0.948065
Target:  5'- aGGCgagcGCGGACGAGGAC--GACGacGACg -3'
miRNA:   3'- -CCGac--UGCCUGCUCUUGgaCUGC--CUG- -5'
10792 3' -55.3 NC_002794.1 + 79979 0.67 0.943772
Target:  5'- cGGCUcggcgacgaggaGGCGGAgGAGGACgagGACGG-Cg -3'
miRNA:   3'- -CCGA------------CUGCCUgCUCUUGga-CUGCCuG- -5'
10792 3' -55.3 NC_002794.1 + 144244 0.67 0.943772
Target:  5'- gGGCacgUGucaGCGGaACGAGAACCUcaaGGCGGuCu -3'
miRNA:   3'- -CCG---AC---UGCC-UGCUCUUGGA---CUGCCuG- -5'
10792 3' -55.3 NC_002794.1 + 115840 0.67 0.943772
Target:  5'- gGGCccGGCGGGCucGGGCCUG--GGACg -3'
miRNA:   3'- -CCGa-CUGCCUGcuCUUGGACugCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.