miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 3' -55.3 NC_002794.1 + 86480 0.67 0.943772
Target:  5'- aGCcggGACGGAUGcuccGGACCgagccggGACGGAUg -3'
miRNA:   3'- cCGa--CUGCCUGCu---CUUGGa------CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 122978 0.67 0.94244
Target:  5'- uGGCUGuacgcgcgccugguGCGGGCc--GugCUGACGGGCc -3'
miRNA:   3'- -CCGAC--------------UGCCUGcucUugGACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 92410 0.67 0.941088
Target:  5'- cGCUGAucgacccgagcaCGGGCGAGGACacgCUGgccgugcggggccgcGCGGACu -3'
miRNA:   3'- cCGACU------------GCCUGCUCUUG---GAC---------------UGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 123666 0.67 0.939254
Target:  5'- aGCUGGugucgcucggccCGGGCuGGGAGCaggcgcgaCUGGCGGGCg -3'
miRNA:   3'- cCGACU------------GCCUG-CUCUUG--------GACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 94154 0.67 0.939254
Target:  5'- cGGCgcugGACGGugGGGGg---GACGGGg -3'
miRNA:   3'- -CCGa---CUGCCugCUCUuggaCUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 22256 0.67 0.93879
Target:  5'- cGCgaacgGGCGGACgugcagagacgcaGAGAcacGCC-GACGGACa -3'
miRNA:   3'- cCGa----CUGCCUG-------------CUCU---UGGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 8439 0.67 0.93879
Target:  5'- aGGg-GGCGGgugaaaaGCGGGGACCUGAcccggcuguucCGGACc -3'
miRNA:   3'- -CCgaCUGCC-------UGCUCUUGGACU-----------GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 95857 0.67 0.936434
Target:  5'- aGGC-GGCGGGCGGGccguuucaguguggcGACCcGGCGG-Cg -3'
miRNA:   3'- -CCGaCUGCCUGCUC---------------UUGGaCUGCCuG- -5'
10792 3' -55.3 NC_002794.1 + 72422 0.67 0.934509
Target:  5'- cGC-GGCGGAgGAgGAGCC-GGCGGAg -3'
miRNA:   3'- cCGaCUGCCUgCU-CUUGGaCUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 149686 0.67 0.934509
Target:  5'- cGCUcGACuGGccGCGGGGgccGCCUGGCGGGu -3'
miRNA:   3'- cCGA-CUG-CC--UGCUCU---UGGACUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 35274 0.67 0.934509
Target:  5'- cGGCUGAaacaccgggUGGGCGucguGcGCCcucgGACGGACc -3'
miRNA:   3'- -CCGACU---------GCCUGCu---CuUGGa---CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 13265 0.67 0.929536
Target:  5'- gGGCUG-UGGugGAGcGGCCgcuguUGACGGcgGCa -3'
miRNA:   3'- -CCGACuGCCugCUC-UUGG-----ACUGCC--UG- -5'
10792 3' -55.3 NC_002794.1 + 144612 0.67 0.929536
Target:  5'- aGCaGACGGugGAGGA---GAUGGGCa -3'
miRNA:   3'- cCGaCUGCCugCUCUUggaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 183593 0.67 0.929536
Target:  5'- cGGUgggGGCGGAgGGGGGCCgcgcGCGGcCg -3'
miRNA:   3'- -CCGa--CUGCCUgCUCUUGGac--UGCCuG- -5'
10792 3' -55.3 NC_002794.1 + 134990 0.68 0.913245
Target:  5'- -cCUGACGGA-GGGGGCC-GACGuGACc -3'
miRNA:   3'- ccGACUGCCUgCUCUUGGaCUGC-CUG- -5'
10792 3' -55.3 NC_002794.1 + 145319 0.68 0.913245
Target:  5'- cGGCgcgcGGCGGGCGGcgcucGGGCCcGAgCGGGCc -3'
miRNA:   3'- -CCGa---CUGCCUGCU-----CUUGGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 126643 0.68 0.913245
Target:  5'- gGGCgcccgGACGcGcCGAGAGaCC-GACGGGCc -3'
miRNA:   3'- -CCGa----CUGC-CuGCUCUU-GGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 153023 0.68 0.90736
Target:  5'- gGGC-GACggGGACGGGAAcgacgcgggucCCUcgGGCGGACg -3'
miRNA:   3'- -CCGaCUG--CCUGCUCUU-----------GGA--CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 126272 0.68 0.90372
Target:  5'- uGGCUGGCGGcgcugggcuugcuguGCGccgcGcGCCUGGCGGuGCa -3'
miRNA:   3'- -CCGACUGCC---------------UGCu---CuUGGACUGCC-UG- -5'
10792 3' -55.3 NC_002794.1 + 105939 0.68 0.899372
Target:  5'- gGGCUGgacgcgcuguacgaACGGcUGGGGGCCgccGCGGACg -3'
miRNA:   3'- -CCGAC--------------UGCCuGCUCUUGGac-UGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.