miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 3' -55.3 NC_002794.1 + 6509 0.69 0.888363
Target:  5'- cGCgGugGGugGAGuccACCuguUGAUGGACc -3'
miRNA:   3'- cCGaCugCCugCUCu--UGG---ACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 7184 0.73 0.700231
Target:  5'- gGGCUGAgGGGgGGGGGCUUauuucaGugGGGCg -3'
miRNA:   3'- -CCGACUgCCUgCUCUUGGA------CugCCUG- -5'
10792 3' -55.3 NC_002794.1 + 8439 0.67 0.93879
Target:  5'- aGGg-GGCGGgugaaaaGCGGGGACCUGAcccggcuguucCGGACc -3'
miRNA:   3'- -CCgaCUGCC-------UGCUCUUGGACU-----------GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 12923 0.69 0.881594
Target:  5'- cGcCUGGCcGuCGAcGACCUGGCGGACu -3'
miRNA:   3'- cC-GACUGcCuGCUcUUGGACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 13265 0.67 0.929536
Target:  5'- gGGCUG-UGGugGAGcGGCCgcuguUGACGGcgGCa -3'
miRNA:   3'- -CCGACuGCCugCUC-UUGG-----ACUGCC--UG- -5'
10792 3' -55.3 NC_002794.1 + 14042 0.69 0.867423
Target:  5'- uGCUGGCGauccuuacgccGACGGcGAuCCUGGCGGAg -3'
miRNA:   3'- cCGACUGC-----------CUGCU-CUuGGACUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 22256 0.67 0.93879
Target:  5'- cGCgaacgGGCGGACgugcagagacgcaGAGAcacGCC-GACGGACa -3'
miRNA:   3'- cCGa----CUGCCUG-------------CUCU---UGGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 30010 0.66 0.952135
Target:  5'- cGGC-GACcGAcCGAGGACCUGGaGGAg -3'
miRNA:   3'- -CCGaCUGcCU-GCUCUUGGACUgCCUg -5'
10792 3' -55.3 NC_002794.1 + 31721 0.69 0.881594
Target:  5'- cGCggGAuccCGGAUGAG-ACCgGGCGGGCg -3'
miRNA:   3'- cCGa-CU---GCCUGCUCuUGGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 33566 0.7 0.844664
Target:  5'- uGCUGACgaucgaccaGGugGuGGACCgccugcGGCGGACg -3'
miRNA:   3'- cCGACUG---------CCugCuCUUGGa-----CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 35274 0.67 0.934509
Target:  5'- cGGCUGAaacaccgggUGGGCGucguGcGCCcucgGACGGACc -3'
miRNA:   3'- -CCGACU---------GCCUGCu---CuUGGa---CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 38589 0.73 0.690375
Target:  5'- cGGCcGccuccuccCGGACGAGAgGCCgGACGGGCg -3'
miRNA:   3'- -CCGaCu-------GCCUGCUCU-UGGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 40062 0.66 0.966255
Target:  5'- cGCUGAcuCGGGgGAGGgaaACCggGGCGGGg -3'
miRNA:   3'- cCGACU--GCCUgCUCU---UGGa-CUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 42584 0.66 0.959619
Target:  5'- cGCgGACGGAgGAGGGCgC-GGCGGcCg -3'
miRNA:   3'- cCGaCUGCCUgCUCUUG-GaCUGCCuG- -5'
10792 3' -55.3 NC_002794.1 + 44347 0.69 0.874612
Target:  5'- cGGCgccGGCGaGAcCGAGAGCgC-GGCGGGCg -3'
miRNA:   3'- -CCGa--CUGC-CU-GCUCUUG-GaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 47810 0.66 0.959619
Target:  5'- cGGCgaacaGGCGGACGAGg----GACGGGa -3'
miRNA:   3'- -CCGa----CUGCCUGCUCuuggaCUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 51257 0.66 0.965313
Target:  5'- aGGCgugggGGCGGGcCGGGAggcaggcgcggcccGCCcGAaCGGGCa -3'
miRNA:   3'- -CCGa----CUGCCU-GCUCU--------------UGGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 51754 0.66 0.955985
Target:  5'- cGGCaGACGGccaacAUGuu--CCUGGCGGGCu -3'
miRNA:   3'- -CCGaCUGCC-----UGCucuuGGACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 53808 0.75 0.551086
Target:  5'- cGGCgggagccucGGCGGgagccucgGCGGGAGCCUcGACGGGCg -3'
miRNA:   3'- -CCGa--------CUGCC--------UGCUCUUGGA-CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 60598 0.66 0.962708
Target:  5'- uGCUGGa-GGCGcagcagcaacagcAGAACCgGACGGGCg -3'
miRNA:   3'- cCGACUgcCUGC-------------UCUUGGaCUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.