miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 3' -55.3 NC_002794.1 + 64700 0.67 0.948065
Target:  5'- aGGCgagcGCGGACGAGGAC--GACGacGACg -3'
miRNA:   3'- -CCGac--UGCCUGCUCUUGgaCUGC--CUG- -5'
10792 3' -55.3 NC_002794.1 + 68136 0.67 0.948065
Target:  5'- uGCUGAUccGCGAGAcCCUGcacaacACGGGCg -3'
miRNA:   3'- cCGACUGccUGCUCUuGGAC------UGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 72422 0.67 0.934509
Target:  5'- cGC-GGCGGAgGAgGAGCC-GGCGGAg -3'
miRNA:   3'- cCGaCUGCCUgCU-CUUGGaCUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 76790 0.7 0.844664
Target:  5'- aGCcgGGCGGGCGAGcggcGACCaccgGAcCGGACg -3'
miRNA:   3'- cCGa-CUGCCUGCUC----UUGGa---CU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 79340 0.69 0.860032
Target:  5'- gGGCcgcccGAuCGcGGCGcAGAGCCUGuCGGACa -3'
miRNA:   3'- -CCGa----CU-GC-CUGC-UCUUGGACuGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 79979 0.67 0.943772
Target:  5'- cGGCUcggcgacgaggaGGCGGAgGAGGACgagGACGG-Cg -3'
miRNA:   3'- -CCGA------------CUGCCUgCUCUUGga-CUGCCuG- -5'
10792 3' -55.3 NC_002794.1 + 80588 1.12 0.003102
Target:  5'- gGGCUGACGGACGAGAACCUGACGGACg -3'
miRNA:   3'- -CCGACUGCCUGCUCUUGGACUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 83051 0.67 0.948065
Target:  5'- cGGCgGA-GGACGAGcGCCcacccACGGGCg -3'
miRNA:   3'- -CCGaCUgCCUGCUCuUGGac---UGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 83233 0.66 0.961013
Target:  5'- cGCUcGCGGACGAGAcgcucuccuACCucaaauuccaccacgUGcACGGACu -3'
miRNA:   3'- cCGAcUGCCUGCUCU---------UGG---------------AC-UGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 86480 0.67 0.943772
Target:  5'- aGCcggGACGGAUGcuccGGACCgagccggGACGGAUg -3'
miRNA:   3'- cCGa--CUGCCUGCu---CUUGGa------CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 87088 0.66 0.969268
Target:  5'- aGGCcgGGCgGGugGGGGugCaGGcCGGGCg -3'
miRNA:   3'- -CCGa-CUG-CCugCUCUugGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 87130 0.66 0.969268
Target:  5'- aGGCcgGGCgGGugGGGGugCaGGcCGGGCg -3'
miRNA:   3'- -CCGa-CUG-CCugCUCUugGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 87172 0.66 0.969268
Target:  5'- aGGCcgGGCgGGugGGGGugCaGGcCGGGCg -3'
miRNA:   3'- -CCGa-CUG-CCugCUCUugGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 87214 0.66 0.969268
Target:  5'- aGGCcgGGCgGGugGGGGugCaGGcCGGGCg -3'
miRNA:   3'- -CCGa-CUG-CCugCUCUugGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 87256 0.66 0.969268
Target:  5'- aGGCcgGGCgGGugGGGGugCaGGcCGGGCg -3'
miRNA:   3'- -CCGa-CUG-CCugCUCUugGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 91202 0.69 0.881594
Target:  5'- cGCUGuucGCGGACGGcGACgCgacGGCGGACg -3'
miRNA:   3'- cCGAC---UGCCUGCUcUUG-Ga--CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 91751 0.68 0.894916
Target:  5'- aGGUgccGGCGGGCG-GcACCgcgcagGACGGGCu -3'
miRNA:   3'- -CCGa--CUGCCUGCuCuUGGa-----CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 91802 0.71 0.785433
Target:  5'- -uCUGcaACGGGCuGAGuGCCUGACGGAg -3'
miRNA:   3'- ccGAC--UGCCUG-CUCuUGGACUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 92315 0.8 0.326116
Target:  5'- gGGCgcgGGCGG-CGGGGGCCcgGGCGGGCg -3'
miRNA:   3'- -CCGa--CUGCCuGCUCUUGGa-CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 92410 0.67 0.941088
Target:  5'- cGCUGAucgacccgagcaCGGGCGAGGACacgCUGgccgugcggggccgcGCGGACu -3'
miRNA:   3'- cCGACU------------GCCUGCUCUUG---GAC---------------UGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.