miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 3' -55.3 NC_002794.1 + 189939 0.69 0.874612
Target:  5'- cGGCcgccGAUGGACccgGAcGGACC-GACGGACg -3'
miRNA:   3'- -CCGa---CUGCCUG---CU-CUUGGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 183593 0.67 0.929536
Target:  5'- cGGUgggGGCGGAgGGGGGCCgcgcGCGGcCg -3'
miRNA:   3'- -CCGa--CUGCCUgCUCUUGGac--UGCCuG- -5'
10792 3' -55.3 NC_002794.1 + 182332 0.77 0.474924
Target:  5'- gGGCgGGCGGGCGAGcgGACg-GGCGGGCg -3'
miRNA:   3'- -CCGaCUGCCUGCUC--UUGgaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 182296 0.7 0.828558
Target:  5'- gGGCgggugGACGGGCaGAcGGGCg-GACGGGCg -3'
miRNA:   3'- -CCGa----CUGCCUG-CU-CUUGgaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 179632 0.66 0.959619
Target:  5'- gGGCgcugcGACGGAaagGAGAAgUCaGGCGGGCu -3'
miRNA:   3'- -CCGa----CUGCCUg--CUCUU-GGaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 178044 0.66 0.969268
Target:  5'- cGGCUGACgGGugGAG-ACUggaagagcGAgGGAUc -3'
miRNA:   3'- -CCGACUG-CCugCUCuUGGa-------CUgCCUG- -5'
10792 3' -55.3 NC_002794.1 + 169762 0.66 0.963041
Target:  5'- cGUUG--GGACGAGAGacCCUGugGcGACg -3'
miRNA:   3'- cCGACugCCUGCUCUU--GGACugC-CUG- -5'
10792 3' -55.3 NC_002794.1 + 160334 0.66 0.969268
Target:  5'- cGCgGAUGGGCGAcGAAUUUGAcCGcGGCg -3'
miRNA:   3'- cCGaCUGCCUGCU-CUUGGACU-GC-CUG- -5'
10792 3' -55.3 NC_002794.1 + 155635 0.71 0.803135
Target:  5'- uGGCcaGGCGGAUGAuGggUCUGAUgaGGGCa -3'
miRNA:   3'- -CCGa-CUGCCUGCU-CuuGGACUG--CCUG- -5'
10792 3' -55.3 NC_002794.1 + 154292 0.66 0.966255
Target:  5'- cGGCUcGACGGuCGAaucGAGCCUccuCGGGa -3'
miRNA:   3'- -CCGA-CUGCCuGCU---CUUGGAcu-GCCUg -5'
10792 3' -55.3 NC_002794.1 + 153799 0.69 0.860032
Target:  5'- cGGaUGA-GGACGAGAGCCggccCGGACc -3'
miRNA:   3'- -CCgACUgCCUGCUCUUGGacu-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 153023 0.68 0.90736
Target:  5'- gGGC-GACggGGACGGGAAcgacgcgggucCCUcgGGCGGACg -3'
miRNA:   3'- -CCGaCUG--CCUGCUCUU-----------GGA--CUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 149835 0.7 0.844664
Target:  5'- ---gGACGGGCGGGGACgagGACGGGg -3'
miRNA:   3'- ccgaCUGCCUGCUCUUGga-CUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 149686 0.67 0.934509
Target:  5'- cGCUcGACuGGccGCGGGGgccGCCUGGCGGGu -3'
miRNA:   3'- cCGA-CUG-CC--UGCUCU---UGGACUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 146906 0.66 0.969268
Target:  5'- aGGCgcuCGGgcGCGGGGAUCggccgGACGGAg -3'
miRNA:   3'- -CCGacuGCC--UGCUCUUGGa----CUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 145565 0.75 0.570756
Target:  5'- cGGUUcGCGGACGAGcGCC-GACGGAg -3'
miRNA:   3'- -CCGAcUGCCUGCUCuUGGaCUGCCUg -5'
10792 3' -55.3 NC_002794.1 + 145319 0.68 0.913245
Target:  5'- cGGCgcgcGGCGGGCGGcgcucGGGCCcGAgCGGGCc -3'
miRNA:   3'- -CCGa---CUGCCUGCU-----CUUGGaCU-GCCUG- -5'
10792 3' -55.3 NC_002794.1 + 144612 0.67 0.929536
Target:  5'- aGCaGACGGugGAGGA---GAUGGGCa -3'
miRNA:   3'- cCGaCUGCCugCUCUUggaCUGCCUG- -5'
10792 3' -55.3 NC_002794.1 + 144244 0.67 0.943772
Target:  5'- gGGCacgUGucaGCGGaACGAGAACCUcaaGGCGGuCu -3'
miRNA:   3'- -CCG---AC---UGCC-UGCUCUUGGA---CUGCCuG- -5'
10792 3' -55.3 NC_002794.1 + 141768 0.66 0.963041
Target:  5'- cGGUUcGAUuccGACGAcGAGCCguccGACGGGCg -3'
miRNA:   3'- -CCGA-CUGc--CUGCU-CUUGGa---CUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.