miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 5' -62.5 NC_002794.1 + 120152 0.66 0.739196
Target:  5'- gUGCCGGacgaCGAGgACCUCGaGAUCc- -3'
miRNA:   3'- gACGGCCg---GCUCgUGGAGCgCUGGcc -5'
10792 5' -62.5 NC_002794.1 + 45889 0.66 0.739196
Target:  5'- aUGCCcGaCCGAGCcccGCC-CGCcGCCGGc -3'
miRNA:   3'- gACGGcC-GGCUCG---UGGaGCGcUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 8111 0.66 0.739196
Target:  5'- -cGCCa-CCGAGCGggcggcggccuCCUCgGUGACCGGc -3'
miRNA:   3'- gaCGGccGGCUCGU-----------GGAG-CGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 69843 0.66 0.739196
Target:  5'- -cGCUGGCUcacCGCCUCGCGAacaggCGGa -3'
miRNA:   3'- gaCGGCCGGcucGUGGAGCGCUg----GCC- -5'
10792 5' -62.5 NC_002794.1 + 119388 0.66 0.739196
Target:  5'- -aGCUgGGCC-AGCACCUgGCG-CCGc -3'
miRNA:   3'- gaCGG-CCGGcUCGUGGAgCGCuGGCc -5'
10792 5' -62.5 NC_002794.1 + 34712 0.66 0.739196
Target:  5'- -gGCCcGCCG-GCGCCacgaggCGCGGgCGGc -3'
miRNA:   3'- gaCGGcCGGCuCGUGGa-----GCGCUgGCC- -5'
10792 5' -62.5 NC_002794.1 + 68761 0.66 0.738287
Target:  5'- -aGCCgGGCCGccggGGCGCCggacgcccggcucUCGCGccCCGGc -3'
miRNA:   3'- gaCGG-CCGGC----UCGUGG-------------AGCGCu-GGCC- -5'
10792 5' -62.5 NC_002794.1 + 86179 0.66 0.735556
Target:  5'- aUGCCccgGGCCGAGCcgggacggaugcuCCgggccgCGCccGACCGGa -3'
miRNA:   3'- gACGG---CCGGCUCGu------------GGa-----GCG--CUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 86371 0.66 0.735556
Target:  5'- aUGCCccgGGCCGAGCcgggacggaugcuCCgggccgCGCccGACCGGa -3'
miRNA:   3'- gACGG---CCGGCUCGu------------GGa-----GCG--CUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 86539 0.66 0.735556
Target:  5'- aUGCCccgGGCCGAGCcgggacggaugcuCCgggccgCGCccGACCGGa -3'
miRNA:   3'- gACGG---CCGGCUCGu------------GGa-----GCG--CUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 44553 0.66 0.735556
Target:  5'- -cGCCGGCgGcGGCGCCcguugacgucacgCGgGACCGa -3'
miRNA:   3'- gaCGGCCGgC-UCGUGGa------------GCgCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 91890 0.66 0.733731
Target:  5'- -gGCCGcgacgagcaguucacGCCGcAGCACCUggccugggccugCGCGACCa- -3'
miRNA:   3'- gaCGGC---------------CGGC-UCGUGGA------------GCGCUGGcc -5'
10792 5' -62.5 NC_002794.1 + 63225 0.66 0.730072
Target:  5'- cCUGCCGcCCcuGCGCCUCcGCG-CCGa -3'
miRNA:   3'- -GACGGCcGGcuCGUGGAG-CGCuGGCc -5'
10792 5' -62.5 NC_002794.1 + 150581 0.66 0.730072
Target:  5'- -cGCCuGCCcucGGGCGCC-CGaggaCGGCCGGg -3'
miRNA:   3'- gaCGGcCGG---CUCGUGGaGC----GCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 125758 0.66 0.730072
Target:  5'- -cGgCGGCCG-GCGgCUCGCcacCCGGc -3'
miRNA:   3'- gaCgGCCGGCuCGUgGAGCGcu-GGCC- -5'
10792 5' -62.5 NC_002794.1 + 194138 0.66 0.730072
Target:  5'- -gGCagCGGCCGcagcAGCGCC-CGCGagcccuGCCGGc -3'
miRNA:   3'- gaCG--GCCGGC----UCGUGGaGCGC------UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 151912 0.66 0.730072
Target:  5'- -aGCCuGGCCGAGCuCCgucUGCGGCg-- -3'
miRNA:   3'- gaCGG-CCGGCUCGuGGa--GCGCUGgcc -5'
10792 5' -62.5 NC_002794.1 + 104009 0.66 0.730072
Target:  5'- -cGCCGGCgGAaCGCCUCcgcaGCGAgCGu -3'
miRNA:   3'- gaCGGCCGgCUcGUGGAG----CGCUgGCc -5'
10792 5' -62.5 NC_002794.1 + 65941 0.66 0.730072
Target:  5'- -cGUCGGCgGcGGUAUCgUCGCGAgCGGc -3'
miRNA:   3'- gaCGGCCGgC-UCGUGG-AGCGCUgGCC- -5'
10792 5' -62.5 NC_002794.1 + 38612 0.66 0.730072
Target:  5'- -gGCCGGaCGGGCGCgUCcCGacucGCCGGu -3'
miRNA:   3'- gaCGGCCgGCUCGUGgAGcGC----UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.