Results 1 - 20 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10792 | 5' | -62.5 | NC_002794.1 | + | 80623 | 1.09 | 0.001259 |
Target: 5'- cCUGCCGGCCGAGCACCUCGCGACCGGc -3' miRNA: 3'- -GACGGCCGGCUCGUGGAGCGCUGGCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 63628 | 0.92 | 0.019974 |
Target: 5'- cCUGCCGGCCGAGCACCUCGUcugcguGACCGc -3' miRNA: 3'- -GACGGCCGGCUCGUGGAGCG------CUGGCc -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 111640 | 0.8 | 0.119329 |
Target: 5'- -cGCCGGUCGGGCGCCgcggcCGCGGCCa- -3' miRNA: 3'- gaCGGCCGGCUCGUGGa----GCGCUGGcc -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 75289 | 0.8 | 0.125263 |
Target: 5'- -gGCCGGCCG-GCGCCUCGCcaGCCGa -3' miRNA: 3'- gaCGGCCGGCuCGUGGAGCGc-UGGCc -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 151647 | 0.78 | 0.163044 |
Target: 5'- -cGCCGGCCG-GCACuuggCUCGCcGCCGGg -3' miRNA: 3'- gaCGGCCGGCuCGUG----GAGCGcUGGCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 145526 | 0.78 | 0.172551 |
Target: 5'- -gGCCGGcCCGAGCGCCUCgGgcgccccgagcggccCGACCGGu -3' miRNA: 3'- gaCGGCC-GGCUCGUGGAG-C---------------GCUGGCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 79297 | 0.78 | 0.175003 |
Target: 5'- cCUGCgUGGCCGAGCGCCUCGaucucaCGGCCu- -3' miRNA: 3'- -GACG-GCCGGCUCGUGGAGC------GCUGGcc -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 116802 | 0.77 | 0.20128 |
Target: 5'- -aGCCGGCuCGGGCGCCguagCGCGGgucgcucuggucCCGGg -3' miRNA: 3'- gaCGGCCG-GCUCGUGGa---GCGCU------------GGCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 121379 | 0.77 | 0.20128 |
Target: 5'- -aGCCGGCCGc-CGCCgggacCGCGGCCGGc -3' miRNA: 3'- gaCGGCCGGCucGUGGa----GCGCUGGCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 112340 | 0.77 | 0.17916 |
Target: 5'- -cGCCGGCCGgcGGCGCCg-GCGGCgGGg -3' miRNA: 3'- gaCGGCCGGC--UCGUGGagCGCUGgCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 137375 | 0.77 | 0.19216 |
Target: 5'- -aGCCGGgCGAGCGCCgaCGCGGguCCGGu -3' miRNA: 3'- gaCGGCCgGCUCGUGGa-GCGCU--GGCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 180385 | 0.76 | 0.210774 |
Target: 5'- gCUGCCGGCC-AGCugCUCGaacggGACCGa -3' miRNA: 3'- -GACGGCCGGcUCGugGAGCg----CUGGCc -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 96194 | 0.76 | 0.215664 |
Target: 5'- cCUGCCGGCCGAGUcccuGCCg-GCG-CUGGg -3' miRNA: 3'- -GACGGCCGGCUCG----UGGagCGCuGGCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 101567 | 0.76 | 0.20598 |
Target: 5'- -cGCCGGCgGgAGUGCCggccgcCGCGGCCGGg -3' miRNA: 3'- gaCGGCCGgC-UCGUGGa-----GCGCUGGCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 98353 | 0.75 | 0.252666 |
Target: 5'- -cGaCCGGCCGAuCGCCgCGCGGCUGGc -3' miRNA: 3'- gaC-GGCCGGCUcGUGGaGCGCUGGCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 108 | 0.75 | 0.247077 |
Target: 5'- -cGCCGGCCGAccGCACgaaaCGcCGACCGGa -3' miRNA: 3'- gaCGGCCGGCU--CGUGga--GC-GCUGGCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 189662 | 0.74 | 0.276069 |
Target: 5'- -gGCUGGCCGAGCggucGCC-C-CGGCCGGg -3' miRNA: 3'- gaCGGCCGGCUCG----UGGaGcGCUGGCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 37787 | 0.74 | 0.282184 |
Target: 5'- -cGUCGGCCGcaGGCGCCUCGaCGAgaCGGu -3' miRNA: 3'- gaCGGCCGGC--UCGUGGAGC-GCUg-GCC- -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 123456 | 0.74 | 0.286529 |
Target: 5'- -gGCUGGCCGAGCACCUguacuacgaggcgcUGCgGACCa- -3' miRNA: 3'- gaCGGCCGGCUCGUGGA--------------GCG-CUGGcc -5' |
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10792 | 5' | -62.5 | NC_002794.1 | + | 146166 | 0.74 | 0.282184 |
Target: 5'- -cGCCGGCCuaucagGAGCGCUUCGaGGCCGa -3' miRNA: 3'- gaCGGCCGG------CUCGUGGAGCgCUGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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