miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 5' -62.5 NC_002794.1 + 80623 1.09 0.001259
Target:  5'- cCUGCCGGCCGAGCACCUCGCGACCGGc -3'
miRNA:   3'- -GACGGCCGGCUCGUGGAGCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 63628 0.92 0.019974
Target:  5'- cCUGCCGGCCGAGCACCUCGUcugcguGACCGc -3'
miRNA:   3'- -GACGGCCGGCUCGUGGAGCG------CUGGCc -5'
10792 5' -62.5 NC_002794.1 + 111640 0.8 0.119329
Target:  5'- -cGCCGGUCGGGCGCCgcggcCGCGGCCa- -3'
miRNA:   3'- gaCGGCCGGCUCGUGGa----GCGCUGGcc -5'
10792 5' -62.5 NC_002794.1 + 75289 0.8 0.125263
Target:  5'- -gGCCGGCCG-GCGCCUCGCcaGCCGa -3'
miRNA:   3'- gaCGGCCGGCuCGUGGAGCGc-UGGCc -5'
10792 5' -62.5 NC_002794.1 + 151647 0.78 0.163044
Target:  5'- -cGCCGGCCG-GCACuuggCUCGCcGCCGGg -3'
miRNA:   3'- gaCGGCCGGCuCGUG----GAGCGcUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 145526 0.78 0.172551
Target:  5'- -gGCCGGcCCGAGCGCCUCgGgcgccccgagcggccCGACCGGu -3'
miRNA:   3'- gaCGGCC-GGCUCGUGGAG-C---------------GCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 79297 0.78 0.175003
Target:  5'- cCUGCgUGGCCGAGCGCCUCGaucucaCGGCCu- -3'
miRNA:   3'- -GACG-GCCGGCUCGUGGAGC------GCUGGcc -5'
10792 5' -62.5 NC_002794.1 + 112340 0.77 0.17916
Target:  5'- -cGCCGGCCGgcGGCGCCg-GCGGCgGGg -3'
miRNA:   3'- gaCGGCCGGC--UCGUGGagCGCUGgCC- -5'
10792 5' -62.5 NC_002794.1 + 137375 0.77 0.19216
Target:  5'- -aGCCGGgCGAGCGCCgaCGCGGguCCGGu -3'
miRNA:   3'- gaCGGCCgGCUCGUGGa-GCGCU--GGCC- -5'
10792 5' -62.5 NC_002794.1 + 116802 0.77 0.20128
Target:  5'- -aGCCGGCuCGGGCGCCguagCGCGGgucgcucuggucCCGGg -3'
miRNA:   3'- gaCGGCCG-GCUCGUGGa---GCGCU------------GGCC- -5'
10792 5' -62.5 NC_002794.1 + 121379 0.77 0.20128
Target:  5'- -aGCCGGCCGc-CGCCgggacCGCGGCCGGc -3'
miRNA:   3'- gaCGGCCGGCucGUGGa----GCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 101567 0.76 0.20598
Target:  5'- -cGCCGGCgGgAGUGCCggccgcCGCGGCCGGg -3'
miRNA:   3'- gaCGGCCGgC-UCGUGGa-----GCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 180385 0.76 0.210774
Target:  5'- gCUGCCGGCC-AGCugCUCGaacggGACCGa -3'
miRNA:   3'- -GACGGCCGGcUCGugGAGCg----CUGGCc -5'
10792 5' -62.5 NC_002794.1 + 96194 0.76 0.215664
Target:  5'- cCUGCCGGCCGAGUcccuGCCg-GCG-CUGGg -3'
miRNA:   3'- -GACGGCCGGCUCG----UGGagCGCuGGCC- -5'
10792 5' -62.5 NC_002794.1 + 108 0.75 0.247077
Target:  5'- -cGCCGGCCGAccGCACgaaaCGcCGACCGGa -3'
miRNA:   3'- gaCGGCCGGCU--CGUGga--GC-GCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 98353 0.75 0.252666
Target:  5'- -cGaCCGGCCGAuCGCCgCGCGGCUGGc -3'
miRNA:   3'- gaC-GGCCGGCUcGUGGaGCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 189662 0.74 0.276069
Target:  5'- -gGCUGGCCGAGCggucGCC-C-CGGCCGGg -3'
miRNA:   3'- gaCGGCCGGCUCG----UGGaGcGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 146166 0.74 0.282184
Target:  5'- -cGCCGGCCuaucagGAGCGCUUCGaGGCCGa -3'
miRNA:   3'- gaCGGCCGG------CUCGUGGAGCgCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 58969 0.74 0.282184
Target:  5'- gUGgaGGCCGAGCGCCUgCGCGACg-- -3'
miRNA:   3'- gACggCCGGCUCGUGGA-GCGCUGgcc -5'
10792 5' -62.5 NC_002794.1 + 68312 0.74 0.282184
Target:  5'- gUGgCGGCCGAcGCguuccgcgGCCUgGUGACCGGg -3'
miRNA:   3'- gACgGCCGGCU-CG--------UGGAgCGCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.