miRNA display CGI


Results 21 - 40 of 262 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 5' -62.5 NC_002794.1 + 146166 0.74 0.282184
Target:  5'- -cGCCGGCCuaucagGAGCGCUUCGaGGCCGa -3'
miRNA:   3'- gaCGGCCGG------CUCGUGGAGCgCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 123456 0.74 0.286529
Target:  5'- -gGCUGGCCGAGCACCUguacuacgaggcgcUGCgGACCa- -3'
miRNA:   3'- gaCGGCCGGCUCGUGGA--------------GCG-CUGGcc -5'
10792 5' -62.5 NC_002794.1 + 14593 0.74 0.288406
Target:  5'- -gGCCGuggcgagcgcGCCGGGCACCgcgaCGgGGCCGGa -3'
miRNA:   3'- gaCGGC----------CGGCUCGUGGa---GCgCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 34279 0.74 0.288406
Target:  5'- -aGgCGGCC-AGCGCCa-GCGACCGGg -3'
miRNA:   3'- gaCgGCCGGcUCGUGGagCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 125929 0.74 0.294736
Target:  5'- gCUGCUcGUCGAGCAguuCCUCGUGGCCGc -3'
miRNA:   3'- -GACGGcCGGCUCGU---GGAGCGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 16285 0.74 0.301173
Target:  5'- cCUGuuGGCgGAGUcuaGCCUgGCGGCCGcGg -3'
miRNA:   3'- -GACggCCGgCUCG---UGGAgCGCUGGC-C- -5'
10792 5' -62.5 NC_002794.1 + 141593 0.74 0.301173
Target:  5'- -cGCCcgcgucGCCGGGCGgCUCgGCGACCGGc -3'
miRNA:   3'- gaCGGc-----CGGCUCGUgGAG-CGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 65130 0.74 0.301173
Target:  5'- -cGCCuGuCCGAGCuCCUCgGCGACUGGg -3'
miRNA:   3'- gaCGGcC-GGCUCGuGGAG-CGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 151703 0.73 0.321132
Target:  5'- -cGCCGGCCGAGCgcGCCagucgCGCGAa-GGa -3'
miRNA:   3'- gaCGGCCGGCUCG--UGGa----GCGCUggCC- -5'
10792 5' -62.5 NC_002794.1 + 90375 0.73 0.321132
Target:  5'- gUGCagGGCCGGGUcucGCCgucCGCGAUCGGg -3'
miRNA:   3'- gACGg-CCGGCUCG---UGGa--GCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 123900 0.73 0.328001
Target:  5'- -cGCCcGcCCGAGCugccGCCUCGCG-CCGGa -3'
miRNA:   3'- gaCGGcC-GGCUCG----UGGAGCGCuGGCC- -5'
10792 5' -62.5 NC_002794.1 + 129255 0.73 0.328001
Target:  5'- aCU-CgGGUCGAGCGCCUCGUcgugagcgGGCCGGu -3'
miRNA:   3'- -GAcGgCCGGCUCGUGGAGCG--------CUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 76534 0.73 0.334276
Target:  5'- --aCCGGCCGcGGCGCCgacgcggUCGCGcGCCGGg -3'
miRNA:   3'- gacGGCCGGC-UCGUGG-------AGCGC-UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 144430 0.73 0.339927
Target:  5'- cCUGCUGcGCCGAgugcagccgugcgcGCACCUgCGCGACUGc -3'
miRNA:   3'- -GACGGC-CGGCU--------------CGUGGA-GCGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 45385 0.73 0.342064
Target:  5'- -cGUCGGCCacacGGGCACCUCGCGcUCGu -3'
miRNA:   3'- gaCGGCCGG----CUCGUGGAGCGCuGGCc -5'
10792 5' -62.5 NC_002794.1 + 53765 0.73 0.349257
Target:  5'- gCUGCCGGCggCGGGaCGCC-CGCGAcgcgcCCGGc -3'
miRNA:   3'- -GACGGCCG--GCUC-GUGGaGCGCU-----GGCC- -5'
10792 5' -62.5 NC_002794.1 + 102748 0.72 0.353624
Target:  5'- -aGCUGGCCGAGgACCcggacuacguggcCGCGcACCGGg -3'
miRNA:   3'- gaCGGCCGGCUCgUGGa------------GCGC-UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 189897 0.72 0.356557
Target:  5'- -gGCCcGCCGucAGCGCCgccgCGCGACCGc -3'
miRNA:   3'- gaCGGcCGGC--UCGUGGa---GCGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 184021 0.72 0.363964
Target:  5'- -cGCCGGCCGccacGGCACCgCGCGcagcGCgCGGu -3'
miRNA:   3'- gaCGGCCGGC----UCGUGGaGCGC----UG-GCC- -5'
10792 5' -62.5 NC_002794.1 + 180682 0.72 0.371476
Target:  5'- -cGCCGGCCGcucccGGCGCC-CGgCGGgCGGa -3'
miRNA:   3'- gaCGGCCGGC-----UCGUGGaGC-GCUgGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.