miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 5' -62.5 NC_002794.1 + 11859 0.66 0.730072
Target:  5'- -cGCCGGCgaCGAccGCccGCCcCGCGACgGGu -3'
miRNA:   3'- gaCGGCCG--GCU--CG--UGGaGCGCUGgCC- -5'
10792 5' -62.5 NC_002794.1 + 78921 0.66 0.720874
Target:  5'- -cGuCCcGUCGGGCACC-CGCcGCCGGc -3'
miRNA:   3'- gaC-GGcCGGCUCGUGGaGCGcUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 55630 0.66 0.720874
Target:  5'- -cGCUGGCC-AGCACg-CG-GGCCGGc -3'
miRNA:   3'- gaCGGCCGGcUCGUGgaGCgCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 96249 0.66 0.720874
Target:  5'- -gGcCCGGUCuuccAGCACCaCGcCGACCGGu -3'
miRNA:   3'- gaC-GGCCGGc---UCGUGGaGC-GCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 179667 0.66 0.720874
Target:  5'- -cGCCGGaCG-GCACC-CGCGGCgGc -3'
miRNA:   3'- gaCGGCCgGCuCGUGGaGCGCUGgCc -5'
10792 5' -62.5 NC_002794.1 + 123675 0.66 0.720874
Target:  5'- -cGCuCGGcCCGGGCugggaGCaggCGCGACUGGc -3'
miRNA:   3'- gaCG-GCC-GGCUCG-----UGga-GCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 192740 0.66 0.720874
Target:  5'- -gGCCaGCCGGuaCACCUCGCGcuccuccacGCCGa -3'
miRNA:   3'- gaCGGcCGGCUc-GUGGAGCGC---------UGGCc -5'
10792 5' -62.5 NC_002794.1 + 138822 0.66 0.720874
Target:  5'- -cGCCgcGGUcuCGAGC---UCGCGACCGGg -3'
miRNA:   3'- gaCGG--CCG--GCUCGuggAGCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 108402 0.66 0.71995
Target:  5'- gCU-CCGGCgGcggcgcccaccacGGCGCCcacccCGCGACCGGc -3'
miRNA:   3'- -GAcGGCCGgC-------------UCGUGGa----GCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 134571 0.66 0.717176
Target:  5'- -cGCCGGCgcagaaggugcuaGAGgACCUCG-GGCCGa -3'
miRNA:   3'- gaCGGCCGg------------CUCgUGGAGCgCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 44350 0.66 0.71161
Target:  5'- -cGCCGG-CGAG-ACCgagagCGCGGCgGGc -3'
miRNA:   3'- gaCGGCCgGCUCgUGGa----GCGCUGgCC- -5'
10792 5' -62.5 NC_002794.1 + 52097 0.66 0.71161
Target:  5'- gCUGCUGGCCGugcugcagcuGCACC-CGUucuuucuggaaGugCGGg -3'
miRNA:   3'- -GACGGCCGGCu---------CGUGGaGCG-----------CugGCC- -5'
10792 5' -62.5 NC_002794.1 + 48074 0.66 0.71161
Target:  5'- -gGCCGGCCagcggGAGCAgCCgcCGCucGCCGGc -3'
miRNA:   3'- gaCGGCCGG-----CUCGU-GGa-GCGc-UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 51093 0.66 0.71161
Target:  5'- -cGCuCGGaaaagaCGAccGCGCCUCGCGcUCGGa -3'
miRNA:   3'- gaCG-GCCg-----GCU--CGUGGAGCGCuGGCC- -5'
10792 5' -62.5 NC_002794.1 + 49619 0.66 0.71161
Target:  5'- -cGCCGGC--GGCGCCUCGCccGCCc- -3'
miRNA:   3'- gaCGGCCGgcUCGUGGAGCGc-UGGcc -5'
10792 5' -62.5 NC_002794.1 + 186860 0.66 0.71161
Target:  5'- gCUGCCGuGCagcagcagCGGGCucGgCUCGCGGuCCGGc -3'
miRNA:   3'- -GACGGC-CG--------GCUCG--UgGAGCGCU-GGCC- -5'
10792 5' -62.5 NC_002794.1 + 190280 0.66 0.71161
Target:  5'- -cGCCGGUagaaguccguguCGaAGCGCCg-GCGGCCGa -3'
miRNA:   3'- gaCGGCCG------------GC-UCGUGGagCGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 653 0.66 0.71068
Target:  5'- -cGCCGcgcagcgcgucucGCCuAGCAuuuuccuguuCUUCGCGGCCGGa -3'
miRNA:   3'- gaCGGC-------------CGGcUCGU----------GGAGCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 100653 0.66 0.708819
Target:  5'- uCUG-CGGCuucuucacguucuuCGGGCGCUacgcgcccgaguUCGUGACCGGg -3'
miRNA:   3'- -GACgGCCG--------------GCUCGUGG------------AGCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 138134 0.66 0.702287
Target:  5'- -cGCCGGUcuCGGGCGgcgguuUCUUGCGcaGCCGGc -3'
miRNA:   3'- gaCGGCCG--GCUCGU------GGAGCGC--UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.