miRNA display CGI


Results 41 - 60 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 5' -62.5 NC_002794.1 + 61981 0.66 0.702287
Target:  5'- gCUGCaGGUCaagcuGCACUUC-CGACCGGa -3'
miRNA:   3'- -GACGgCCGGcu---CGUGGAGcGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 121321 0.66 0.702287
Target:  5'- -gGuuGGCCcucgaGGCGCCgCGCGGCUGa -3'
miRNA:   3'- gaCggCCGGc----UCGUGGaGCGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 95501 0.66 0.702287
Target:  5'- -aGCuCGGCC-AGUAUCUCuaugGCGACCGc -3'
miRNA:   3'- gaCG-GCCGGcUCGUGGAG----CGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 178547 0.66 0.702287
Target:  5'- gCUGCCGaUCGGGCACCaCGUcuucacGCCGGu -3'
miRNA:   3'- -GACGGCcGGCUCGUGGaGCGc-----UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 19323 0.66 0.702287
Target:  5'- -cGCCGcGCUG-GCgACC-CGCGcGCCGGu -3'
miRNA:   3'- gaCGGC-CGGCuCG-UGGaGCGC-UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 44165 0.66 0.702287
Target:  5'- gUGCaCGGCgCGAGCGgcggCUCGuCGAcuCCGGg -3'
miRNA:   3'- gACG-GCCG-GCUCGUg---GAGC-GCU--GGCC- -5'
10792 5' -62.5 NC_002794.1 + 77962 0.66 0.702287
Target:  5'- -cGCCGucGCCGAGCcgacuccuccGCCUCGgaaCGGCgGGc -3'
miRNA:   3'- gaCGGC--CGGCUCG----------UGGAGC---GCUGgCC- -5'
10792 5' -62.5 NC_002794.1 + 67841 0.66 0.702287
Target:  5'- -cGCCGucGCCcGGCGCCgccgCGCGucacCCGGc -3'
miRNA:   3'- gaCGGC--CGGcUCGUGGa---GCGCu---GGCC- -5'
10792 5' -62.5 NC_002794.1 + 135740 0.66 0.702287
Target:  5'- cCUGCCGcGCCGcGC-CCUCGagGAUCaGGc -3'
miRNA:   3'- -GACGGC-CGGCuCGuGGAGCg-CUGG-CC- -5'
10792 5' -62.5 NC_002794.1 + 176610 0.66 0.702287
Target:  5'- -gGCCGGCaCG-GCcauCCUCGUGGcguucggcCCGGa -3'
miRNA:   3'- gaCGGCCG-GCuCGu--GGAGCGCU--------GGCC- -5'
10792 5' -62.5 NC_002794.1 + 138134 0.66 0.702287
Target:  5'- -cGCCGGUcuCGGGCGgcgguuUCUUGCGcaGCCGGc -3'
miRNA:   3'- gaCGGCCG--GCUCGU------GGAGCGC--UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 183666 0.66 0.702287
Target:  5'- -cGCCGGgcCCGAGCGCCgacgggucgaGCGcCCGc -3'
miRNA:   3'- gaCGGCC--GGCUCGUGGag--------CGCuGGCc -5'
10792 5' -62.5 NC_002794.1 + 12234 0.66 0.701352
Target:  5'- -cGCCGGC--GGCGCCgucCGCGGcgccgauCCGGa -3'
miRNA:   3'- gaCGGCCGgcUCGUGGa--GCGCU-------GGCC- -5'
10792 5' -62.5 NC_002794.1 + 192242 0.66 0.701352
Target:  5'- gCUGCCGucGCCGAcgGCGCgguucgcucgucuCUCGCGAcgacacgcgacCCGGa -3'
miRNA:   3'- -GACGGC--CGGCU--CGUG-------------GAGCGCU-----------GGCC- -5'
10792 5' -62.5 NC_002794.1 + 148434 0.66 0.701352
Target:  5'- -cGCCGGCUccuGGCuggcgcucuacugGCCUcCGCGGCaCGGg -3'
miRNA:   3'- gaCGGCCGGc--UCG-------------UGGA-GCGCUG-GCC- -5'
10792 5' -62.5 NC_002794.1 + 85020 0.66 0.700416
Target:  5'- gUGCCccgGGCCcacgcucGGGUGCCUCGggcccgcgcucgaCGACCGGc -3'
miRNA:   3'- gACGG---CCGG-------CUCGUGGAGC-------------GCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 156400 0.66 0.692913
Target:  5'- -aG-CGGCCG-GCGCCgcggcCGCGGCCa- -3'
miRNA:   3'- gaCgGCCGGCuCGUGGa----GCGCUGGcc -5'
10792 5' -62.5 NC_002794.1 + 150217 0.66 0.692913
Target:  5'- gCUGCU-GCCGAGCugCgUGCGACgGc -3'
miRNA:   3'- -GACGGcCGGCUCGugGaGCGCUGgCc -5'
10792 5' -62.5 NC_002794.1 + 121974 0.66 0.692913
Target:  5'- gUG-CGGCUcGGUcccGCCgagCGCGGCCGGg -3'
miRNA:   3'- gACgGCCGGcUCG---UGGa--GCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 67553 0.66 0.692913
Target:  5'- -cGCCcgGGCCGcgccGCACCaaaGcCGACCGGu -3'
miRNA:   3'- gaCGG--CCGGCu---CGUGGag-C-GCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.