miRNA display CGI


Results 1 - 20 of 262 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 5' -62.5 NC_002794.1 + 108 0.75 0.247077
Target:  5'- -cGCCGGCCGAccGCACgaaaCGcCGACCGGa -3'
miRNA:   3'- gaCGGCCGGCU--CGUGga--GC-GCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 653 0.66 0.71068
Target:  5'- -cGCCGcgcagcgcgucucGCCuAGCAuuuuccuguuCUUCGCGGCCGGa -3'
miRNA:   3'- gaCGGC-------------CGGcUCGU----------GGAGCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 8111 0.66 0.739196
Target:  5'- -cGCCa-CCGAGCGggcggcggccuCCUCgGUGACCGGc -3'
miRNA:   3'- gaCGGccGGCUCGU-----------GGAG-CGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 10327 0.69 0.532282
Target:  5'- --cUCGGCCGucgucGGCGCC--GCGACCGGg -3'
miRNA:   3'- gacGGCCGGC-----UCGUGGagCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 11859 0.66 0.730072
Target:  5'- -cGCCGGCgaCGAccGCccGCCcCGCGACgGGu -3'
miRNA:   3'- gaCGGCCG--GCU--CG--UGGaGCGCUGgCC- -5'
10792 5' -62.5 NC_002794.1 + 12025 0.69 0.550814
Target:  5'- -cGCCGGcCCGGGCGUC-CGCGccuuccccuGCCGGu -3'
miRNA:   3'- gaCGGCC-GGCUCGUGGaGCGC---------UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 12178 0.72 0.379094
Target:  5'- -cGCC-GCCGA-CGCCgcCGCGGCCGGg -3'
miRNA:   3'- gaCGGcCGGCUcGUGGa-GCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 12234 0.66 0.701352
Target:  5'- -cGCCGGC--GGCGCCgucCGCGGcgccgauCCGGa -3'
miRNA:   3'- gaCGGCCGgcUCGUGGa--GCGCU-------GGCC- -5'
10792 5' -62.5 NC_002794.1 + 13749 0.69 0.513978
Target:  5'- -gGCCGGCCGA-CACCagacUCGCcgccCCGGa -3'
miRNA:   3'- gaCGGCCGGCUcGUGG----AGCGcu--GGCC- -5'
10792 5' -62.5 NC_002794.1 + 14593 0.74 0.288406
Target:  5'- -gGCCGuggcgagcgcGCCGGGCACCgcgaCGgGGCCGGa -3'
miRNA:   3'- gaCGGC----------CGGCUCGUGGa---GCgCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 16285 0.74 0.301173
Target:  5'- cCUGuuGGCgGAGUcuaGCCUgGCGGCCGcGg -3'
miRNA:   3'- -GACggCCGgCUCG---UGGAgCGCUGGC-C- -5'
10792 5' -62.5 NC_002794.1 + 17441 0.69 0.560155
Target:  5'- -cGCCGGCgCucGgGCC-CGCGACCGa -3'
miRNA:   3'- gaCGGCCG-GcuCgUGGaGCGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 18806 0.67 0.645526
Target:  5'- -cGCCGGCCaacGGGUcggcgACCUCGgcCGGCgCGGa -3'
miRNA:   3'- gaCGGCCGG---CUCG-----UGGAGC--GCUG-GCC- -5'
10792 5' -62.5 NC_002794.1 + 19323 0.66 0.702287
Target:  5'- -cGCCGcGCUG-GCgACC-CGCGcGCCGGu -3'
miRNA:   3'- gaCGGC-CGGCuCG-UGGaGCGC-UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 19517 0.69 0.541522
Target:  5'- -cGCCGcuCgGAGCGCCggCGCGGCgCGGc -3'
miRNA:   3'- gaCGGCc-GgCUCGUGGa-GCGCUG-GCC- -5'
10792 5' -62.5 NC_002794.1 + 20623 0.68 0.597901
Target:  5'- aUGcCCGGCuCcGGCuGCCUCGaCGGCUGGu -3'
miRNA:   3'- gAC-GGCCG-GcUCG-UGGAGC-GCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 20772 0.67 0.664556
Target:  5'- ---aCGGCgCGAGCACCUCGUGuuCa- -3'
miRNA:   3'- gacgGCCG-GCUCGUGGAGCGCugGcc -5'
10792 5' -62.5 NC_002794.1 + 21959 0.68 0.606455
Target:  5'- -cGUCGGCCGcucccgcGGCGCCgucgucucCGCGACCc- -3'
miRNA:   3'- gaCGGCCGGC-------UCGUGGa-------GCGCUGGcc -5'
10792 5' -62.5 NC_002794.1 + 24014 0.67 0.683495
Target:  5'- -cGCCGucaCCGcGGCGCCUCGgCGACggCGGu -3'
miRNA:   3'- gaCGGCc--GGC-UCGUGGAGC-GCUG--GCC- -5'
10792 5' -62.5 NC_002794.1 + 32302 0.72 0.39464
Target:  5'- -cGCCGcGgCGGccGCGCCggcCGCGGCCGGa -3'
miRNA:   3'- gaCGGC-CgGCU--CGUGGa--GCGCUGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.