miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 5' -62.5 NC_002794.1 + 32588 0.69 0.560155
Target:  5'- gUGCCggGGCCGGG-GCCggggcCGgGGCCGGg -3'
miRNA:   3'- gACGG--CCGGCUCgUGGa----GCgCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 32809 0.7 0.460755
Target:  5'- -cGCCGcGaCCGucGUcuucgucgGCCUCGCGGCCGGc -3'
miRNA:   3'- gaCGGC-C-GGCu-CG--------UGGAGCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 34084 0.69 0.541522
Target:  5'- -cGgCGGCCGGGCAgCCgucggGCGGcCCGGa -3'
miRNA:   3'- gaCgGCCGGCUCGU-GGag---CGCU-GGCC- -5'
10792 5' -62.5 NC_002794.1 + 34279 0.74 0.288406
Target:  5'- -aGgCGGCC-AGCGCCa-GCGACCGGg -3'
miRNA:   3'- gaCgGCCGGcUCGUGGagCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 34712 0.66 0.739196
Target:  5'- -gGCCcGCCG-GCGCCacgaggCGCGGgCGGc -3'
miRNA:   3'- gaCGGcCGGCuCGUGGa-----GCGCUgGCC- -5'
10792 5' -62.5 NC_002794.1 + 37745 0.67 0.664556
Target:  5'- -cGCCGGCgGcggcgcggcGGCGCCggcgggaGCGGCCGu -3'
miRNA:   3'- gaCGGCCGgC---------UCGUGGag-----CGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 37787 0.74 0.282184
Target:  5'- -cGUCGGCCGcaGGCGCCUCGaCGAgaCGGu -3'
miRNA:   3'- gaCGGCCGGC--UCGUGGAGC-GCUg-GCC- -5'
10792 5' -62.5 NC_002794.1 + 38444 0.7 0.46943
Target:  5'- -gGCCGGaCUGAGgaGCCggCGCGGCCGcGg -3'
miRNA:   3'- gaCGGCC-GGCUCg-UGGa-GCGCUGGC-C- -5'
10792 5' -62.5 NC_002794.1 + 38565 0.68 0.626459
Target:  5'- -aGCCcGCCG-GCGCCUCGaCGGagUCGGc -3'
miRNA:   3'- gaCGGcCGGCuCGUGGAGC-GCU--GGCC- -5'
10792 5' -62.5 NC_002794.1 + 38612 0.66 0.730072
Target:  5'- -gGCCGGaCGGGCGCgUCcCGacucGCCGGu -3'
miRNA:   3'- gaCGGCCgGCUCGUGgAGcGC----UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 39444 0.72 0.393853
Target:  5'- -gGCauGCUGAGCACCUUcaccgugGUGGCCGGg -3'
miRNA:   3'- gaCGgcCGGCUCGUGGAG-------CGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 43652 0.7 0.487023
Target:  5'- gCUGCCGccgaacgaGCCGGGC-UCUCGgGcCCGGg -3'
miRNA:   3'- -GACGGC--------CGGCUCGuGGAGCgCuGGCC- -5'
10792 5' -62.5 NC_002794.1 + 43992 0.71 0.410592
Target:  5'- -aGCCGGacguguggGAGCACggCGCGGCCGGc -3'
miRNA:   3'- gaCGGCCgg------CUCGUGgaGCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 44165 0.66 0.702287
Target:  5'- gUGCaCGGCgCGAGCGgcggCUCGuCGAcuCCGGg -3'
miRNA:   3'- gACG-GCCG-GCUCGUg---GAGC-GCU--GGCC- -5'
10792 5' -62.5 NC_002794.1 + 44240 0.7 0.495936
Target:  5'- gUGCCGggcggcucgguGCCGGGCGgCUCGgCcGCCGGg -3'
miRNA:   3'- gACGGC-----------CGGCUCGUgGAGC-GcUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 44350 0.66 0.71161
Target:  5'- -cGCCGG-CGAG-ACCgagagCGCGGCgGGc -3'
miRNA:   3'- gaCGGCCgGCUCgUGGa----GCGCUGgCC- -5'
10792 5' -62.5 NC_002794.1 + 44419 0.72 0.379094
Target:  5'- -gGCCGgcGCCGAGCGgCUCGaCGAcaCCGGc -3'
miRNA:   3'- gaCGGC--CGGCUCGUgGAGC-GCU--GGCC- -5'
10792 5' -62.5 NC_002794.1 + 44553 0.66 0.735556
Target:  5'- -cGCCGGCgGcGGCGCCcguugacgucacgCGgGACCGa -3'
miRNA:   3'- gaCGGCCGgC-UCGUGGa------------GCgCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 44767 0.67 0.635994
Target:  5'- -cGCCGucCCGAcgcaGCGCCUcCGUGAUCGGc -3'
miRNA:   3'- gaCGGCc-GGCU----CGUGGA-GCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 44992 0.69 0.537819
Target:  5'- -cGCCuuGGCCGuGCGgaccuguugcagaCUCGUGGCCGGg -3'
miRNA:   3'- gaCGG--CCGGCuCGUg------------GAGCGCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.