miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10792 5' -62.5 NC_002794.1 + 195592 0.7 0.487023
Target:  5'- -gGaCCGGCCGAcGCGCCccCGCG-CUGGc -3'
miRNA:   3'- gaC-GGCCGGCU-CGUGGa-GCGCuGGCC- -5'
10792 5' -62.5 NC_002794.1 + 194973 0.69 0.532282
Target:  5'- -cGCCGGCuCGuacaggcacAGCGCCgCGCGcacgcccuGCCGGg -3'
miRNA:   3'- gaCGGCCG-GC---------UCGUGGaGCGC--------UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 194138 0.66 0.730072
Target:  5'- -gGCagCGGCCGcagcAGCGCC-CGCGagcccuGCCGGc -3'
miRNA:   3'- gaCG--GCCGGC----UCGUGGaGCGC------UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 194023 0.69 0.541522
Target:  5'- -cGCCGccGCCG-GCGCCUCGCccGCCGc -3'
miRNA:   3'- gaCGGC--CGGCuCGUGGAGCGc-UGGCc -5'
10792 5' -62.5 NC_002794.1 + 192740 0.66 0.720874
Target:  5'- -gGCCaGCCGGuaCACCUCGCGcuccuccacGCCGa -3'
miRNA:   3'- gaCGGcCGGCUc-GUGGAGCGC---------UGGCc -5'
10792 5' -62.5 NC_002794.1 + 192648 0.7 0.504922
Target:  5'- -aGCCGcGCCGccGCGCgCUCGCGcgacucgaagcGCCGGc -3'
miRNA:   3'- gaCGGC-CGGCu-CGUG-GAGCGC-----------UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 192399 0.68 0.578963
Target:  5'- -cGCCGcGCCGGGguagucgaaaCGCCgcgacgggucCGCGGCCGGc -3'
miRNA:   3'- gaCGGC-CGGCUC----------GUGGa---------GCGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 192242 0.66 0.701352
Target:  5'- gCUGCCGucGCCGAcgGCGCgguucgcucgucuCUCGCGAcgacacgcgacCCGGa -3'
miRNA:   3'- -GACGGC--CGGCU--CGUG-------------GAGCGCU-----------GGCC- -5'
10792 5' -62.5 NC_002794.1 + 191374 0.68 0.56954
Target:  5'- -gGCCGGaCCcuccGCGCC-CGCGGCCGc -3'
miRNA:   3'- gaCGGCC-GGcu--CGUGGaGCGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 190280 0.66 0.71161
Target:  5'- -cGCCGGUagaaguccguguCGaAGCGCCg-GCGGCCGa -3'
miRNA:   3'- gaCGGCCG------------GC-UCGUGGagCGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 189897 0.72 0.356557
Target:  5'- -gGCCcGCCGucAGCGCCgccgCGCGACCGc -3'
miRNA:   3'- gaCGGcCGGC--UCGUGGa---GCGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 189662 0.74 0.276069
Target:  5'- -gGCUGGCCGAGCggucGCC-C-CGGCCGGg -3'
miRNA:   3'- gaCGGCCGGCUCG----UGGaGcGCUGGCC- -5'
10792 5' -62.5 NC_002794.1 + 189492 0.69 0.513978
Target:  5'- gUGCacccaGCUGGGCACCUCGUGuCCGu -3'
miRNA:   3'- gACGgc---CGGCUCGUGGAGCGCuGGCc -5'
10792 5' -62.5 NC_002794.1 + 188340 0.7 0.504922
Target:  5'- -cGCCGGC--GGCGCCgUCGCGcccguccgGCCGGc -3'
miRNA:   3'- gaCGGCCGgcUCGUGG-AGCGC--------UGGCC- -5'
10792 5' -62.5 NC_002794.1 + 188270 0.7 0.475551
Target:  5'- -gGCgGGCCGgguagcggaugcagGGCGCCgCGCG-CCGGa -3'
miRNA:   3'- gaCGgCCGGC--------------UCGUGGaGCGCuGGCC- -5'
10792 5' -62.5 NC_002794.1 + 187914 0.72 0.402566
Target:  5'- -cGCCcGCCGGGCcCCgcCGCGACCGu -3'
miRNA:   3'- gaCGGcCGGCUCGuGGa-GCGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 187684 0.67 0.683495
Target:  5'- aUGCgGGUCGAGCGgCC-CGuUGGCCGu -3'
miRNA:   3'- gACGgCCGGCUCGU-GGaGC-GCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 187583 0.67 0.664556
Target:  5'- -cGUCGGCgCGGcCGCCgUCGCGAcgcCCGGc -3'
miRNA:   3'- gaCGGCCG-GCUcGUGG-AGCGCU---GGCC- -5'
10792 5' -62.5 NC_002794.1 + 187233 0.69 0.541522
Target:  5'- -gGCUGGCCGcAGCACagauaGCGGCUGa -3'
miRNA:   3'- gaCGGCCGGC-UCGUGgag--CGCUGGCc -5'
10792 5' -62.5 NC_002794.1 + 186860 0.66 0.71161
Target:  5'- gCUGCCGuGCagcagcagCGGGCucGgCUCGCGGuCCGGc -3'
miRNA:   3'- -GACGGC-CG--------GCUCG--UgGAGCGCU-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.