miRNA display CGI


Results 1 - 20 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 89755 0.66 0.803121
Target:  5'- cGCGGCGAUUGGCaGCuccgcgacgucGGGGAcaugccggaguuccuCGACGGg -3'
miRNA:   3'- -CGCCGCUGGCCG-CG-----------CCUCU---------------GCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 115887 0.66 0.79978
Target:  5'- cGgGGCGuCCGcggaGCGCGGGGGguuCGugGGg -3'
miRNA:   3'- -CgCCGCuGGC----CGCGCCUCU---GCugCUg -5'
10793 3' -61.3 NC_002794.1 + 61895 0.66 0.79978
Target:  5'- cGCGGCGA---GCGCGGcGAgCGcaGCGACg -3'
miRNA:   3'- -CGCCGCUggcCGCGCCuCU-GC--UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 184623 0.66 0.79978
Target:  5'- aGCGGCagcguccacGAUCGGCGUcGcGuCGGCGGCg -3'
miRNA:   3'- -CGCCG---------CUGGCCGCGcCuCuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 95021 0.66 0.79978
Target:  5'- gGCGGCuGugCGGCaucucgcCGGuGGCGGCGcCc -3'
miRNA:   3'- -CGCCG-CugGCCGc------GCCuCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 113538 0.66 0.79978
Target:  5'- uCGGCGucGCCGGCcCGGAGcagGCGcCGGa -3'
miRNA:   3'- cGCCGC--UGGCCGcGCCUC---UGCuGCUg -5'
10793 3' -61.3 NC_002794.1 + 182200 0.66 0.79978
Target:  5'- uCGGCG-CCGGCGUcgcgccacGGGGcucCGACGGu -3'
miRNA:   3'- cGCCGCuGGCCGCG--------CCUCu--GCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 119862 0.66 0.79726
Target:  5'- aGUGGUGcCCGGUGCGcGGGAgguauugcaggaacUGGCGGa -3'
miRNA:   3'- -CGCCGCuGGCCGCGC-CUCU--------------GCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 192237 0.66 0.792185
Target:  5'- uCGGCGcuGCCgucgccgacGGCGCGGuucgcucgucucucGCGACGACa -3'
miRNA:   3'- cGCCGC--UGG---------CCGCGCCuc------------UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 187464 0.66 0.791334
Target:  5'- uCGGCGucGCuCGGCGCGcgccGGGcCGAgGACg -3'
miRNA:   3'- cGCCGC--UG-GCCGCGC----CUCuGCUgCUG- -5'
10793 3' -61.3 NC_002794.1 + 47417 0.66 0.791334
Target:  5'- uCGGCG-CCGucGCGCGGAG-CGccaGGCg -3'
miRNA:   3'- cGCCGCuGGC--CGCGCCUCuGCug-CUG- -5'
10793 3' -61.3 NC_002794.1 + 117369 0.66 0.791334
Target:  5'- aGCGGCgGGCCGccuGCaCGGucGCGGCGAa -3'
miRNA:   3'- -CGCCG-CUGGC---CGcGCCucUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 38165 0.66 0.791334
Target:  5'- aGCaGGCGGCUGcGCuCGGcGACGAaGGCg -3'
miRNA:   3'- -CG-CCGCUGGC-CGcGCCuCUGCUgCUG- -5'
10793 3' -61.3 NC_002794.1 + 69403 0.66 0.791334
Target:  5'- -aGaGCGGCCaGGCGCcGAGccGCGACaGGCa -3'
miRNA:   3'- cgC-CGCUGG-CCGCGcCUC--UGCUG-CUG- -5'
10793 3' -61.3 NC_002794.1 + 118042 0.66 0.790483
Target:  5'- aGCaGGCGAgcguggcCCGucuCGCGGaAGACGGcCGACg -3'
miRNA:   3'- -CG-CCGCU-------GGCc--GCGCC-UCUGCU-GCUG- -5'
10793 3' -61.3 NC_002794.1 + 120011 0.66 0.78963
Target:  5'- -aGGCGAUCGaacucgaggacuCGCGGGGACgucgucauGACGGCg -3'
miRNA:   3'- cgCCGCUGGCc-----------GCGCCUCUG--------CUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 145367 0.66 0.788776
Target:  5'- uGUGGUcACCGG-GCGGAGACGcuccgcucgguggcGCGcCg -3'
miRNA:   3'- -CGCCGcUGGCCgCGCCUCUGC--------------UGCuG- -5'
10793 3' -61.3 NC_002794.1 + 139482 0.66 0.786206
Target:  5'- gGUGGUguaGAUgGGCGCGGGcgcgcugcagcacauGGCGAUGAa -3'
miRNA:   3'- -CGCCG---CUGgCCGCGCCU---------------CUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 58968 0.66 0.782763
Target:  5'- cGUGGaGGCCGaGCGCcugcGCGACGACg -3'
miRNA:   3'- -CGCCgCUGGC-CGCGccucUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 84282 0.66 0.782763
Target:  5'- cGCaGCuGCCGaCGgGGAG-CGGCGGCg -3'
miRNA:   3'- -CGcCGcUGGCcGCgCCUCuGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.