Results 21 - 40 of 350 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 181897 | 0.66 | 0.777564 |
Target: 5'- -aGGCGACa-GCGCGG-GucguacaccacccgcGCGACGGCc -3' miRNA: 3'- cgCCGCUGgcCGCGCCuC---------------UGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 84282 | 0.66 | 0.782763 |
Target: 5'- cGCaGCuGCCGaCGgGGAG-CGGCGGCg -3' miRNA: 3'- -CGcCGcUGGCcGCgCCUCuGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 47417 | 0.66 | 0.791334 |
Target: 5'- uCGGCG-CCGucGCGCGGAG-CGccaGGCg -3' miRNA: 3'- cGCCGCuGGC--CGCGCCUCuGCug-CUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 117369 | 0.66 | 0.791334 |
Target: 5'- aGCGGCgGGCCGccuGCaCGGucGCGGCGAa -3' miRNA: 3'- -CGCCG-CUGGC---CGcGCCucUGCUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 182200 | 0.66 | 0.79978 |
Target: 5'- uCGGCG-CCGGCGUcgcgccacGGGGcucCGACGGu -3' miRNA: 3'- cGCCGCuGGCCGCG--------CCUCu--GCUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 113538 | 0.66 | 0.79978 |
Target: 5'- uCGGCGucGCCGGCcCGGAGcagGCGcCGGa -3' miRNA: 3'- cGCCGC--UGGCCGcGCCUC---UGCuGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 95021 | 0.66 | 0.79978 |
Target: 5'- gGCGGCuGugCGGCaucucgcCGGuGGCGGCGcCc -3' miRNA: 3'- -CGCCG-CugGCCGc------GCCuCUGCUGCuG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 184623 | 0.66 | 0.79978 |
Target: 5'- aGCGGCagcguccacGAUCGGCGUcGcGuCGGCGGCg -3' miRNA: 3'- -CGCCG---------CUGGCCGCGcCuCuGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 61895 | 0.66 | 0.79978 |
Target: 5'- cGCGGCGA---GCGCGGcGAgCGcaGCGACg -3' miRNA: 3'- -CGCCGCUggcCGCGCCuCU-GC--UGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 89755 | 0.66 | 0.803121 |
Target: 5'- cGCGGCGAUUGGCaGCuccgcgacgucGGGGAcaugccggaguuccuCGACGGg -3' miRNA: 3'- -CGCCGCUGGCCG-CG-----------CCUCU---------------GCUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 187464 | 0.66 | 0.791334 |
Target: 5'- uCGGCGucGCuCGGCGCGcgccGGGcCGAgGACg -3' miRNA: 3'- cGCCGC--UG-GCCGCGC----CUCuGCUgCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 192237 | 0.66 | 0.792185 |
Target: 5'- uCGGCGcuGCCgucgccgacGGCGCGGuucgcucgucucucGCGACGACa -3' miRNA: 3'- cGCCGC--UGG---------CCGCGCCuc------------UGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 58968 | 0.66 | 0.782763 |
Target: 5'- cGUGGaGGCCGaGCGCcugcGCGACGACg -3' miRNA: 3'- -CGCCgCUGGC-CGCGccucUGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 145367 | 0.66 | 0.788776 |
Target: 5'- uGUGGUcACCGG-GCGGAGACGcuccgcucgguggcGCGcCg -3' miRNA: 3'- -CGCCGcUGGCCgCGCCUCUGC--------------UGCuG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 139482 | 0.66 | 0.786206 |
Target: 5'- gGUGGUguaGAUgGGCGCGGGcgcgcugcagcacauGGCGAUGAa -3' miRNA: 3'- -CGCCG---CUGgCCGCGCCU---------------CUGCUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 120011 | 0.66 | 0.78963 |
Target: 5'- -aGGCGAUCGaacucgaggacuCGCGGGGACgucgucauGACGGCg -3' miRNA: 3'- cgCCGCUGGCc-----------GCGCCUCUG--------CUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 118042 | 0.66 | 0.790483 |
Target: 5'- aGCaGGCGAgcguggcCCGucuCGCGGaAGACGGcCGACg -3' miRNA: 3'- -CG-CCGCU-------GGCc--GCGCC-UCUGCU-GCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 69403 | 0.66 | 0.791334 |
Target: 5'- -aGaGCGGCCaGGCGCcGAGccGCGACaGGCa -3' miRNA: 3'- cgC-CGCUGG-CCGCGcCUC--UGCUG-CUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 38165 | 0.66 | 0.791334 |
Target: 5'- aGCaGGCGGCUGcGCuCGGcGACGAaGGCg -3' miRNA: 3'- -CG-CCGCUGGC-CGcGCCuCUGCUgCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 119862 | 0.66 | 0.79726 |
Target: 5'- aGUGGUGcCCGGUGCGcGGGAgguauugcaggaacUGGCGGa -3' miRNA: 3'- -CGCCGCuGGCCGCGC-CUCU--------------GCUGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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