Results 41 - 60 of 350 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 122628 | 0.66 | 0.780169 |
Target: 5'- cGCGGCuACgGGCacGCGGuGGACGugaucuaccugcugGCGGCg -3' miRNA: 3'- -CGCCGcUGgCCG--CGCC-UCUGC--------------UGCUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 181897 | 0.66 | 0.777564 |
Target: 5'- -aGGCGACa-GCGCGG-GucguacaccacccgcGCGACGGCc -3' miRNA: 3'- cgCCGCUGgcCGCGCCuC---------------UGCUGCUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 84282 | 0.66 | 0.782763 |
Target: 5'- cGCaGCuGCCGaCGgGGAG-CGGCGGCg -3' miRNA: 3'- -CGcCGcUGGCcGCgCCUCuGCUGCUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 58968 | 0.66 | 0.782763 |
Target: 5'- cGUGGaGGCCGaGCGCcugcGCGACGACg -3' miRNA: 3'- -CGCCgCUGGC-CGCGccucUGCUGCUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 145367 | 0.66 | 0.788776 |
Target: 5'- uGUGGUcACCGG-GCGGAGACGcuccgcucgguggcGCGcCg -3' miRNA: 3'- -CGCCGcUGGCCgCGCCUCUGC--------------UGCuG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 139482 | 0.66 | 0.786206 |
Target: 5'- gGUGGUguaGAUgGGCGCGGGcgcgcugcagcacauGGCGAUGAa -3' miRNA: 3'- -CGCCG---CUGgCCGCGCCU---------------CUGCUGCUg -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 120011 | 0.66 | 0.78963 |
Target: 5'- -aGGCGAUCGaacucgaggacuCGCGGGGACgucgucauGACGGCg -3' miRNA: 3'- cgCCGCUGGCc-----------GCGCCUCUG--------CUGCUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 118042 | 0.66 | 0.790483 |
Target: 5'- aGCaGGCGAgcguggcCCGucuCGCGGaAGACGGcCGACg -3' miRNA: 3'- -CG-CCGCU-------GGCc--GCGCC-UCUGCU-GCUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 69403 | 0.66 | 0.791334 |
Target: 5'- -aGaGCGGCCaGGCGCcGAGccGCGACaGGCa -3' miRNA: 3'- cgC-CGCUGG-CCGCGcCUC--UGCUG-CUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 18555 | 0.67 | 0.74737 |
Target: 5'- gGCGGCGACCGcGaccgugccCGCGaccgucuCGACGACg -3' miRNA: 3'- -CGCCGCUGGC-C--------GCGCcucu---GCUGCUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 78985 | 0.67 | 0.74737 |
Target: 5'- uGCuGCGGCCGcuCcCGGAGucGCGGCGACu -3' miRNA: 3'- -CGcCGCUGGCc-GcGCCUC--UGCUGCUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 109166 | 0.67 | 0.746465 |
Target: 5'- aUGGCGACgagCGGCgguagcgGCGGAGGCaGCGGg -3' miRNA: 3'- cGCCGCUG---GCCG-------CGCCUCUGcUGCUg -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 146617 | 0.67 | 0.738282 |
Target: 5'- gGCGGCGAggacgucgaaGGCGguacCGGGaGCGGCGACg -3' miRNA: 3'- -CGCCGCUgg--------CCGC----GCCUcUGCUGCUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 156398 | 0.67 | 0.74737 |
Target: 5'- -aGaGCGGCCGGCGCcGcGGCcGCGGCc -3' miRNA: 3'- cgC-CGCUGGCCGCGcCuCUGcUGCUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 99942 | 0.67 | 0.74737 |
Target: 5'- uGCGGCuGuuCGGC-CGGAccGcCGACGGCg -3' miRNA: 3'- -CGCCG-CugGCCGcGCCU--CuGCUGCUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 55357 | 0.67 | 0.74737 |
Target: 5'- -aGGCGGCCgaGGCgGCcGAGGCGGCcgaGGCg -3' miRNA: 3'- cgCCGCUGG--CCG-CGcCUCUGCUG---CUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 116062 | 0.67 | 0.74737 |
Target: 5'- aGC-GCGACUGGgguCGCGGAGcgcucggcGCGGCGGu -3' miRNA: 3'- -CGcCGCUGGCC---GCGCCUC--------UGCUGCUg -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 11946 | 0.67 | 0.750981 |
Target: 5'- cGCGGUGAgCGuGCucuccgucuacgcucGUGGAGAUGGCGuCc -3' miRNA: 3'- -CGCCGCUgGC-CG---------------CGCCUCUGCUGCuG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 104468 | 0.67 | 0.74737 |
Target: 5'- gGCGGCGugUgcaGGaUGCGGGcGGCcACGGCg -3' miRNA: 3'- -CGCCGCugG---CC-GCGCCU-CUGcUGCUG- -5' |
|||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 133498 | 0.67 | 0.738282 |
Target: 5'- cGCGGCGACC--CGUcc-GACGGCGACc -3' miRNA: 3'- -CGCCGCUGGccGCGccuCUGCUGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home