Results 61 - 80 of 350 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 34708 | 0.67 | 0.71987 |
Target: 5'- aGCaGGCccGCCGGCGCcacGAGGCGcggGCGGCc -3' miRNA: 3'- -CG-CCGc-UGGCCGCGc--CUCUGC---UGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 111132 | 0.67 | 0.718942 |
Target: 5'- cCGGCGGCCGGUgcuccacgcgguaGCGGgucAGGCaGACG-Cg -3' miRNA: 3'- cGCCGCUGGCCG-------------CGCC---UCUG-CUGCuG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 143400 | 0.67 | 0.71987 |
Target: 5'- uGCuGCucGACCGGCGCGGgccGGGCGAaGGu -3' miRNA: 3'- -CGcCG--CUGGCCGCGCC---UCUGCUgCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 128318 | 0.67 | 0.710562 |
Target: 5'- cGUGGCGACCGaGCccgccCGGAcGCgGugGACu -3' miRNA: 3'- -CGCCGCUGGC-CGc----GCCUcUG-CugCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 126643 | 0.67 | 0.738282 |
Target: 5'- -gGGCGcCCGGaCGCGccgaGAGAcCGACGGg -3' miRNA: 3'- cgCCGCuGGCC-GCGC----CUCU-GCUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 44260 | 0.67 | 0.738282 |
Target: 5'- -gGGCGGCuCGGcCGcCGGGGACGGagGAg -3' miRNA: 3'- cgCCGCUG-GCC-GC-GCCUCUGCUg-CUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 104468 | 0.67 | 0.74737 |
Target: 5'- gGCGGCGugUgcaGGaUGCGGGcGGCcACGGCg -3' miRNA: 3'- -CGCCGCugG---CC-GCGCCU-CUGcUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 11946 | 0.67 | 0.750981 |
Target: 5'- cGCGGUGAgCGuGCucuccgucuacgcucGUGGAGAUGGCGuCc -3' miRNA: 3'- -CGCCGCUgGC-CG---------------CGCCUCUGCUGCuG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 116062 | 0.67 | 0.74737 |
Target: 5'- aGC-GCGACUGGgguCGCGGAGcgcucggcGCGGCGGu -3' miRNA: 3'- -CGcCGCUGGCC---GCGCCUC--------UGCUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 55357 | 0.67 | 0.74737 |
Target: 5'- -aGGCGGCCgaGGCgGCcGAGGCGGCcgaGGCg -3' miRNA: 3'- cgCCGCUGG--CCG-CGcCUCUGCUG---CUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 99942 | 0.67 | 0.74737 |
Target: 5'- uGCGGCuGuuCGGC-CGGAccGcCGACGGCg -3' miRNA: 3'- -CGCCG-CugGCCGcGCCU--CuGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 156398 | 0.67 | 0.74737 |
Target: 5'- -aGaGCGGCCGGCGCcGcGGCcGCGGCc -3' miRNA: 3'- cgC-CGCUGGCCGCGcCuCUGcUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 18555 | 0.67 | 0.74737 |
Target: 5'- gGCGGCGACCGcGaccgugccCGCGaccgucuCGACGACg -3' miRNA: 3'- -CGCCGCUGGC-C--------GCGCcucu---GCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 78985 | 0.67 | 0.74737 |
Target: 5'- uGCuGCGGCCGcuCcCGGAGucGCGGCGACu -3' miRNA: 3'- -CGcCGCUGGCc-GcGCCUC--UGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 109166 | 0.67 | 0.746465 |
Target: 5'- aUGGCGACgagCGGCgguagcgGCGGAGGCaGCGGg -3' miRNA: 3'- cGCCGCUG---GCCG-------CGCCUCUGcUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 146617 | 0.67 | 0.738282 |
Target: 5'- gGCGGCGAggacgucgaaGGCGguacCGGGaGCGGCGACg -3' miRNA: 3'- -CGCCGCUgg--------CCGC----GCCUcUGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 133498 | 0.67 | 0.738282 |
Target: 5'- cGCGGCGACC--CGUcc-GACGGCGACc -3' miRNA: 3'- -CGCCGCUGGccGCGccuCUGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 127925 | 0.67 | 0.738282 |
Target: 5'- gGCGGgGAuUCGGgGCGuGucggucauguGGACGugGACg -3' miRNA: 3'- -CGCCgCU-GGCCgCGC-C----------UCUGCugCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 177718 | 0.67 | 0.738282 |
Target: 5'- aCGGCGGuccaCGGgGCGGAucCGAcCGACu -3' miRNA: 3'- cGCCGCUg---GCCgCGCCUcuGCU-GCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 53257 | 0.67 | 0.738282 |
Target: 5'- cCGGCGucGCC-GCGCGacaacGGGGCGGCGAg -3' miRNA: 3'- cGCCGC--UGGcCGCGC-----CUCUGCUGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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