miRNA display CGI


Results 81 - 100 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 55357 0.67 0.74737
Target:  5'- -aGGCGGCCgaGGCgGCcGAGGCGGCcgaGGCg -3'
miRNA:   3'- cgCCGCUGG--CCG-CGcCUCUGCUG---CUG- -5'
10793 3' -61.3 NC_002794.1 + 116062 0.67 0.74737
Target:  5'- aGC-GCGACUGGgguCGCGGAGcgcucggcGCGGCGGu -3'
miRNA:   3'- -CGcCGCUGGCC---GCGCCUC--------UGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 11946 0.67 0.750981
Target:  5'- cGCGGUGAgCGuGCucuccgucuacgcucGUGGAGAUGGCGuCc -3'
miRNA:   3'- -CGCCGCUgGC-CG---------------CGCCUCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 104468 0.67 0.74737
Target:  5'- gGCGGCGugUgcaGGaUGCGGGcGGCcACGGCg -3'
miRNA:   3'- -CGCCGCugG---CC-GCGCCU-CUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 122779 0.67 0.74737
Target:  5'- cGCGaGCGGCCucgacGGCGUGGAGuuCGcCGuCa -3'
miRNA:   3'- -CGC-CGCUGG-----CCGCGCCUCu-GCuGCuG- -5'
10793 3' -61.3 NC_002794.1 + 146617 0.67 0.738282
Target:  5'- gGCGGCGAggacgucgaaGGCGguacCGGGaGCGGCGACg -3'
miRNA:   3'- -CGCCGCUgg--------CCGC----GCCUcUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 133498 0.67 0.738282
Target:  5'- cGCGGCGACC--CGUcc-GACGGCGACc -3'
miRNA:   3'- -CGCCGCUGGccGCGccuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 127925 0.67 0.738282
Target:  5'- gGCGGgGAuUCGGgGCGuGucggucauguGGACGugGACg -3'
miRNA:   3'- -CGCCgCU-GGCCgCGC-C----------UCUGCugCUG- -5'
10793 3' -61.3 NC_002794.1 + 143074 0.67 0.71987
Target:  5'- cGCGGCGGCagaCGuaGUGGAGguuGCG-CGGCg -3'
miRNA:   3'- -CGCCGCUG---GCcgCGCCUC---UGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 128686 0.67 0.729113
Target:  5'- cGCGGCGGuCCGGaggcuCGGAacaGACGGacaGACg -3'
miRNA:   3'- -CGCCGCU-GGCCgc---GCCU---CUGCUg--CUG- -5'
10793 3' -61.3 NC_002794.1 + 78327 0.67 0.729113
Target:  5'- cCGGCGcgaCGG-GCGGAGGCGcCGGa -3'
miRNA:   3'- cGCCGCug-GCCgCGCCUCUGCuGCUg -5'
10793 3' -61.3 NC_002794.1 + 106325 0.67 0.729113
Target:  5'- cGCGcGCGACgGGuCGaCGGuucgccGGGuCGACGGCg -3'
miRNA:   3'- -CGC-CGCUGgCC-GC-GCC------UCU-GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 141947 0.67 0.729113
Target:  5'- gGCGGCGACCcguuggacGGC-CGG-GAUGAuCGAg -3'
miRNA:   3'- -CGCCGCUGG--------CCGcGCCuCUGCU-GCUg -5'
10793 3' -61.3 NC_002794.1 + 14455 0.67 0.732789
Target:  5'- cGCgGGCGACCgugucgagcGGCGCGccgcgcucgcuguucGcGGCGGCGGCc -3'
miRNA:   3'- -CG-CCGCUGG---------CCGCGC---------------CuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 126643 0.67 0.738282
Target:  5'- -gGGCGcCCGGaCGCGccgaGAGAcCGACGGg -3'
miRNA:   3'- cgCCGCuGGCC-GCGC----CUCU-GCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 44260 0.67 0.738282
Target:  5'- -gGGCGGCuCGGcCGcCGGGGACGGagGAg -3'
miRNA:   3'- cgCCGCUG-GCC-GC-GCCUCUGCUg-CUg -5'
10793 3' -61.3 NC_002794.1 + 53257 0.67 0.738282
Target:  5'- cCGGCGucGCC-GCGCGacaacGGGGCGGCGAg -3'
miRNA:   3'- cGCCGC--UGGcCGCGC-----CUCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 177718 0.67 0.738282
Target:  5'- aCGGCGGuccaCGGgGCGGAucCGAcCGACu -3'
miRNA:   3'- cGCCGCUg---GCCgCGCCUcuGCU-GCUG- -5'
10793 3' -61.3 NC_002794.1 + 49126 0.68 0.691778
Target:  5'- cCGG-GACCGGC-CGGAGGuCGuuguCGACc -3'
miRNA:   3'- cGCCgCUGGCCGcGCCUCU-GCu---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 112318 0.68 0.691778
Target:  5'- uCGGCGccgaCGGCGgGGAGcGCGcCGGCc -3'
miRNA:   3'- cGCCGCug--GCCGCgCCUC-UGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.