miRNA display CGI


Results 1 - 20 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 79445 1.11 0.00119
Target:  5'- gGCGGCGACCGGCGCGGAGACGACGACg -3'
miRNA:   3'- -CGCCGCUGGCCGCGCCUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 94048 0.86 0.06182
Target:  5'- aGCGGCGG-CGGUGCGGGGGCGGCGGg -3'
miRNA:   3'- -CGCCGCUgGCCGCGCCUCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 145589 0.85 0.070103
Target:  5'- aGCGGCGGCCGGCucccGCGGAGucgggcGCGACGAg -3'
miRNA:   3'- -CGCCGCUGGCCG----CGCCUC------UGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 95822 0.85 0.066669
Target:  5'- gGCGGCGGCCGGgggaGCGGcGGCGGCGGCc -3'
miRNA:   3'- -CGCCGCUGGCCg---CGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 128263 0.84 0.08777
Target:  5'- cGCGGUcggGGCCGaGCGCGGAGcCGACGGCc -3'
miRNA:   3'- -CGCCG---CUGGC-CGCGCCUCuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 106978 0.84 0.081455
Target:  5'- cGCGGCGGCCGGCacgGCGGuGGCGGCG-Cu -3'
miRNA:   3'- -CGCCGCUGGCCG---CGCCuCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 142320 0.84 0.079448
Target:  5'- gGCGGCGGCgcaGGCgGCGGAGGCGGCGGa -3'
miRNA:   3'- -CGCCGCUGg--CCG-CGCCUCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 95779 0.83 0.089977
Target:  5'- aCGGCGGCCGGgGCGaGAGGCG-CGGCg -3'
miRNA:   3'- cGCCGCUGGCCgCGC-CUCUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 121714 0.82 0.106961
Target:  5'- uCGGCGACCa-CGCGGAcGACGACGACg -3'
miRNA:   3'- cGCCGCUGGccGCGCCU-CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 37883 0.81 0.120891
Target:  5'- -gGGCGGCgGGgGCGGuGGCGGCGGCa -3'
miRNA:   3'- cgCCGCUGgCCgCGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 145719 0.81 0.126922
Target:  5'- aCGGgGAUCgGGCGCuGGAGGCGGCGGCg -3'
miRNA:   3'- cGCCgCUGG-CCGCG-CCUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 142350 0.8 0.14672
Target:  5'- gGCGGCGGa-GGCgGCGGAGGCGGCGGa -3'
miRNA:   3'- -CGCCGCUggCCG-CGCCUCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 142212 0.8 0.150282
Target:  5'- gGCGGCGGCagcggCGGUGCGGGGAgCGGCGGa -3'
miRNA:   3'- -CGCCGCUG-----GCCGCGCCUCU-GCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 42600 0.8 0.150282
Target:  5'- cGCGGCGGCCGGgaGCGGGcucucuCGACGACc -3'
miRNA:   3'- -CGCCGCUGGCCg-CGCCUcu----GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 62069 0.8 0.157643
Target:  5'- gGCGGCGacGCCGGCgGCGacGACGGCGACg -3'
miRNA:   3'- -CGCCGC--UGGCCG-CGCcuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 32870 0.8 0.139826
Target:  5'- cCGGCGGgCGGCgGCGGcGGCGGCGGCa -3'
miRNA:   3'- cGCCGCUgGCCG-CGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 107525 0.8 0.143235
Target:  5'- cGCcGaCGGCCGGCGCGGcgccGGCGGCGACg -3'
miRNA:   3'- -CGcC-GCUGGCCGCGCCu---CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 1494 0.79 0.175821
Target:  5'- gGCGGCGACCGGCcuuauacggggucCGGAGGCGuguuccuCGACa -3'
miRNA:   3'- -CGCCGCUGGCCGc------------GCCUCUGCu------GCUG- -5'
10793 3' -61.3 NC_002794.1 + 18708 0.79 0.173348
Target:  5'- gGCGGCGGuCCGGaCGuCGGAGcCGACGAg -3'
miRNA:   3'- -CGCCGCU-GGCC-GC-GCCUCuGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 69741 0.79 0.173348
Target:  5'- aGCGccaCGGCCGGCgacgccGCGGGGAUGGCGACg -3'
miRNA:   3'- -CGCc--GCUGGCCG------CGCCUCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.