Results 41 - 60 of 350 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 149334 | 0.76 | 0.273511 |
Target: 5'- cCGGaccgaacCGGCCGGgguCGCGGGGGCGugGACg -3' miRNA: 3'- cGCC-------GCUGGCC---GCGCCUCUGCugCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 38437 | 0.76 | 0.254724 |
Target: 5'- gGCGGCGggccggacugaggaGCCGGCGCGGccGCGGCG-Cg -3' miRNA: 3'- -CGCCGC--------------UGGCCGCGCCucUGCUGCuG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 102526 | 0.76 | 0.266931 |
Target: 5'- cGCGGgaCGACCucuucucgggccGCGUGGAGACGGCGGCc -3' miRNA: 3'- -CGCC--GCUGGc-----------CGCGCCUCUGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 112099 | 0.76 | 0.268118 |
Target: 5'- uGC-GCGuCCaGGCGCGGccgGGACGACGGCg -3' miRNA: 3'- -CGcCGCuGG-CCGCGCC---UCUGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 49028 | 0.76 | 0.250196 |
Target: 5'- cGCGGCGucguCCGGCGCGGucgucagcguccaGGGCGcgcagcACGACu -3' miRNA: 3'- -CGCCGCu---GGCCGCGCC-------------UCUGC------UGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 116862 | 0.76 | 0.255866 |
Target: 5'- uGCGGCGGCCGugucGCGCucgucagGGGGGCGcCGGCg -3' miRNA: 3'- -CGCCGCUGGC----CGCG-------CCUCUGCuGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 34747 | 0.76 | 0.274116 |
Target: 5'- aGCGcGCGA-CGGCGCGGugGGACG-CGGCa -3' miRNA: 3'- -CGC-CGCUgGCCGCGCC--UCUGCuGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 153412 | 0.76 | 0.262226 |
Target: 5'- cGCGaGCG-CCGcGCGCGGAGccgagcuggGCGugGACg -3' miRNA: 3'- -CGC-CGCuGGC-CGCGCCUC---------UGCugCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 71236 | 0.76 | 0.245181 |
Target: 5'- aGUGGCGGCCGGCGUGGAc-CGGC-ACg -3' miRNA: 3'- -CGCCGCUGGCCGCGCCUcuGCUGcUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 141613 | 0.76 | 0.250758 |
Target: 5'- uCGGCGACCGGCucGCGGucuaGCGACGGg -3' miRNA: 3'- cGCCGCUGGCCG--CGCCuc--UGCUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 26652 | 0.76 | 0.262226 |
Target: 5'- aCGGCGGCCGGCucgucgGCGGGGugGAgCGcCa -3' miRNA: 3'- cGCCGCUGGCCG------CGCCUCugCU-GCuG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 107068 | 0.76 | 0.274116 |
Target: 5'- cGCGGCGccGCCGGCauguCGGAGcCGACGGg -3' miRNA: 3'- -CGCCGC--UGGCCGc---GCCUCuGCUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 65250 | 0.75 | 0.292756 |
Target: 5'- gGCGGCGAuCCGGCcucGCcGAG-CGGCGGCg -3' miRNA: 3'- -CGCCGCU-GGCCG---CGcCUCuGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 127602 | 0.75 | 0.317089 |
Target: 5'- cGCGGCcgcuGAgCGGCGCGGAccggacucgucgucGACGcCGACg -3' miRNA: 3'- -CGCCG----CUgGCCGCGCCU--------------CUGCuGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 55278 | 0.75 | 0.292756 |
Target: 5'- gGCGGCGGuggCGGCGaCGaGGGCGGCGGCg -3' miRNA: 3'- -CGCCGCUg--GCCGC-GCcUCUGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 13077 | 0.75 | 0.312371 |
Target: 5'- cCGcGCGACCGGCGCgaagucccgGGGGACGAggugcguuCGGCg -3' miRNA: 3'- cGC-CGCUGGCCGCG---------CCUCUGCU--------GCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 121398 | 0.75 | 0.319127 |
Target: 5'- --cGCGGCCGGCGCcGGGACcGCGACc -3' miRNA: 3'- cgcCGCUGGCCGCGcCUCUGcUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 142131 | 0.75 | 0.299185 |
Target: 5'- gGCGGcCGACCgccgGGUcacgGCGGAGGCGGCGGu -3' miRNA: 3'- -CGCC-GCUGG----CCG----CGCCUCUGCUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 61532 | 0.75 | 0.299185 |
Target: 5'- cCGGCGGCCGcCGCGaAGACGACGcCg -3' miRNA: 3'- cGCCGCUGGCcGCGCcUCUGCUGCuG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 112348 | 0.75 | 0.292756 |
Target: 5'- gGCGGCG-CCGGCgGCGG-GGCGGgGAg -3' miRNA: 3'- -CGCCGCuGGCCG-CGCCuCUGCUgCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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