miRNA display CGI


Results 21 - 40 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 69741 0.79 0.173348
Target:  5'- aGCGccaCGGCCGGCgacgccGCGGGGAUGGCGACg -3'
miRNA:   3'- -CGCc--GCUGGCCG------CGCCUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 18708 0.79 0.173348
Target:  5'- gGCGGCGGuCCGGaCGuCGGAGcCGACGAg -3'
miRNA:   3'- -CGCCGCU-GGCC-GC-GCCUCuGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 1494 0.79 0.175821
Target:  5'- gGCGGCGACCGGCcuuauacggggucCGGAGGCGuguuccuCGACa -3'
miRNA:   3'- -CGCCGCUGGCCGc------------GCCUCUGCu------GCUG- -5'
10793 3' -61.3 NC_002794.1 + 191858 0.79 0.177069
Target:  5'- cGUGGUcgugaaaGGCCGGCgGCGGAGGgGGCGGCg -3'
miRNA:   3'- -CGCCG-------CUGGCCG-CGCCUCUgCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 64822 0.79 0.177487
Target:  5'- gGCGGCGAgCCGGCGCcGAcGACcgGACGGCg -3'
miRNA:   3'- -CGCCGCU-GGCCGCGcCU-CUG--CUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 120058 0.79 0.177487
Target:  5'- gGUGGCGGCCGcggaggccgacGCgGCGGuGGCGGCGACg -3'
miRNA:   3'- -CGCCGCUGGC-----------CG-CGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 118272 0.78 0.186029
Target:  5'- gGCGGCGgcGCCGGCGuCGGGGACcGCGcCg -3'
miRNA:   3'- -CGCCGC--UGGCCGC-GCCUCUGcUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 116019 0.78 0.190434
Target:  5'- gGUGGCGAUUGGCGCGGGGACcggaGAgGAg -3'
miRNA:   3'- -CGCCGCUGGCCGCGCCUCUG----CUgCUg -5'
10793 3' -61.3 NC_002794.1 + 101281 0.78 0.190434
Target:  5'- gGUGGCGG-CGGCGgGGAGGaGACGACg -3'
miRNA:   3'- -CGCCGCUgGCCGCgCCUCUgCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 44719 0.78 0.194477
Target:  5'- cGCGGCGacgucgGCCGGCGCcgccGGAgggcuaaGACGGCGACu -3'
miRNA:   3'- -CGCCGC------UGGCCGCG----CCU-------CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 120131 0.78 0.19952
Target:  5'- aCGGCGACCGGgGaCGGgccggugccGGACGACGAg -3'
miRNA:   3'- cGCCGCUGGCCgC-GCC---------UCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 21887 0.78 0.204203
Target:  5'- cGCGggguguccGCGGCCugcgucggugguGGCgGCGGAGACGACGGCg -3'
miRNA:   3'- -CGC--------CGCUGG------------CCG-CGCCUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 179428 0.78 0.204203
Target:  5'- -gGGCccCgGGCGCGGAGGCGugGACc -3'
miRNA:   3'- cgCCGcuGgCCGCGCCUCUGCugCUG- -5'
10793 3' -61.3 NC_002794.1 + 18251 0.78 0.208981
Target:  5'- cGCGGcCGACCGGCGacCGcGAGAUGcGCGGCg -3'
miRNA:   3'- -CGCC-GCUGGCCGC--GC-CUCUGC-UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 134390 0.77 0.218827
Target:  5'- cGCGGCGAuuucggcauCCGGCGCcucGAGGCGcCGGCg -3'
miRNA:   3'- -CGCCGCU---------GGCCGCGc--CUCUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 64694 0.77 0.218827
Target:  5'- aCGGCGAggCGaGCGCGGAcgagGACGACGACg -3'
miRNA:   3'- cGCCGCUg-GC-CGCGCCU----CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 95880 0.77 0.229066
Target:  5'- uGUGGCGAcCCGGCgGCGaGGGCGcACGACg -3'
miRNA:   3'- -CGCCGCU-GGCCG-CGCcUCUGC-UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 121582 0.77 0.229066
Target:  5'- aGC-GUGACgGGCGCGGGGucguuCGGCGACg -3'
miRNA:   3'- -CGcCGCUGgCCGCGCCUCu----GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 100457 0.77 0.233804
Target:  5'- gGCGGCGGcgccuucCCGGUgGCGGAGAaccugGACGACg -3'
miRNA:   3'- -CGCCGCU-------GGCCG-CGCCUCUg----CUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 179684 0.77 0.234336
Target:  5'- gGCGGCGACgguggcggCGGCGaCGGuGGCGACGcCg -3'
miRNA:   3'- -CGCCGCUG--------GCCGC-GCCuCUGCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.