miRNA display CGI


Results 41 - 60 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 71236 0.76 0.245181
Target:  5'- aGUGGCGGCCGGCGUGGAc-CGGC-ACg -3'
miRNA:   3'- -CGCCGCUGGCCGCGCCUcuGCUGcUG- -5'
10793 3' -61.3 NC_002794.1 + 49028 0.76 0.250196
Target:  5'- cGCGGCGucguCCGGCGCGGucgucagcguccaGGGCGcgcagcACGACu -3'
miRNA:   3'- -CGCCGCu---GGCCGCGCC-------------UCUGC------UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 141613 0.76 0.250758
Target:  5'- uCGGCGACCGGCucGCGGucuaGCGACGGg -3'
miRNA:   3'- cGCCGCUGGCCG--CGCCuc--UGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 38437 0.76 0.254724
Target:  5'- gGCGGCGggccggacugaggaGCCGGCGCGGccGCGGCG-Cg -3'
miRNA:   3'- -CGCCGC--------------UGGCCGCGCCucUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 116862 0.76 0.255866
Target:  5'- uGCGGCGGCCGugucGCGCucgucagGGGGGCGcCGGCg -3'
miRNA:   3'- -CGCCGCUGGC----CGCG-------CCUCUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 26652 0.76 0.262226
Target:  5'- aCGGCGGCCGGCucgucgGCGGGGugGAgCGcCa -3'
miRNA:   3'- cGCCGCUGGCCG------CGCCUCugCU-GCuG- -5'
10793 3' -61.3 NC_002794.1 + 153412 0.76 0.262226
Target:  5'- cGCGaGCG-CCGcGCGCGGAGccgagcuggGCGugGACg -3'
miRNA:   3'- -CGC-CGCuGGC-CGCGCCUC---------UGCugCUG- -5'
10793 3' -61.3 NC_002794.1 + 102526 0.76 0.266931
Target:  5'- cGCGGgaCGACCucuucucgggccGCGUGGAGACGGCGGCc -3'
miRNA:   3'- -CGCC--GCUGGc-----------CGCGCCUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 112099 0.76 0.268118
Target:  5'- uGC-GCGuCCaGGCGCGGccgGGACGACGGCg -3'
miRNA:   3'- -CGcCGCuGG-CCGCGCC---UCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 149334 0.76 0.273511
Target:  5'- cCGGaccgaacCGGCCGGgguCGCGGGGGCGugGACg -3'
miRNA:   3'- cGCC-------GCUGGCC---GCGCCUCUGCugCUG- -5'
10793 3' -61.3 NC_002794.1 + 107068 0.76 0.274116
Target:  5'- cGCGGCGccGCCGGCauguCGGAGcCGACGGg -3'
miRNA:   3'- -CGCCGC--UGGCCGc---GCCUCuGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 34747 0.76 0.274116
Target:  5'- aGCGcGCGA-CGGCGCGGugGGACG-CGGCa -3'
miRNA:   3'- -CGC-CGCUgGCCGCGCC--UCUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 125738 0.75 0.286435
Target:  5'- gGCGGaGGCgGGcCGCGG-GACGGCGGCc -3'
miRNA:   3'- -CGCCgCUGgCC-GCGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 112348 0.75 0.292756
Target:  5'- gGCGGCG-CCGGCgGCGG-GGCGGgGAg -3'
miRNA:   3'- -CGCCGCuGGCCG-CGCCuCUGCUgCUg -5'
10793 3' -61.3 NC_002794.1 + 65250 0.75 0.292756
Target:  5'- gGCGGCGAuCCGGCcucGCcGAG-CGGCGGCg -3'
miRNA:   3'- -CGCCGCU-GGCCG---CGcCUCuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 55278 0.75 0.292756
Target:  5'- gGCGGCGGuggCGGCGaCGaGGGCGGCGGCg -3'
miRNA:   3'- -CGCCGCUg--GCCGC-GCcUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 107029 0.75 0.299185
Target:  5'- cGCGGCG-CCGcuggggacccccGCGuCGGAGGCGGCGGg -3'
miRNA:   3'- -CGCCGCuGGC------------CGC-GCCUCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 61532 0.75 0.299185
Target:  5'- cCGGCGGCCGcCGCGaAGACGACGcCg -3'
miRNA:   3'- cGCCGCUGGCcGCGCcUCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 142131 0.75 0.299185
Target:  5'- gGCGGcCGACCgccgGGUcacgGCGGAGGCGGCGGu -3'
miRNA:   3'- -CGCC-GCUGG----CCG----CGCCUCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 13077 0.75 0.312371
Target:  5'- cCGcGCGACCGGCGCgaagucccgGGGGACGAggugcguuCGGCg -3'
miRNA:   3'- cGC-CGCUGGCCGCG---------CCUCUGCU--------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.