miRNA display CGI


Results 61 - 80 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 50769 0.75 0.312371
Target:  5'- gGCGGCGGCgaCGGCGCGucucGGGCGGCGcCu -3'
miRNA:   3'- -CGCCGCUG--GCCGCGCc---UCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 127602 0.75 0.317089
Target:  5'- cGCGGCcgcuGAgCGGCGCGGAccggacucgucgucGACGcCGACg -3'
miRNA:   3'- -CGCCG----CUgGCCGCGCCU--------------CUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 121398 0.75 0.319127
Target:  5'- --cGCGGCCGGCGCcGGGACcGCGACc -3'
miRNA:   3'- cgcCGCUGGCCGCGcCUCUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 50586 0.74 0.325992
Target:  5'- cGCGGCGgcugggugGCCGGCGCcggGGGGAUcgaGACGAg -3'
miRNA:   3'- -CGCCGC--------UGGCCGCG---CCUCUG---CUGCUg -5'
10793 3' -61.3 NC_002794.1 + 127358 0.74 0.330863
Target:  5'- cGCGGCGG-CGGCGCGGccgcucgugucggcGGACGGCa-- -3'
miRNA:   3'- -CGCCGCUgGCCGCGCC--------------UCUGCUGcug -5'
10793 3' -61.3 NC_002794.1 + 133390 0.74 0.332967
Target:  5'- gGCGGUcauGAUCGGCcCGGGGGuCGACGAUa -3'
miRNA:   3'- -CGCCG---CUGGCCGcGCCUCU-GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 94223 0.74 0.332967
Target:  5'- gGCGGCGACgGGCGgGcGGGcCGGUGACg -3'
miRNA:   3'- -CGCCGCUGgCCGCgC-CUCuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 72422 0.74 0.34005
Target:  5'- cGCGGCGgaggaggaGCCGGCG-GaGGGAcCGGCGGCg -3'
miRNA:   3'- -CGCCGC--------UGGCCGCgC-CUCU-GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 67023 0.74 0.34005
Target:  5'- gGCGGCGGCCGGCucccgccgcgucGCGGAccCGGCGuCc -3'
miRNA:   3'- -CGCCGCUGGCCG------------CGCCUcuGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 94442 0.74 0.347242
Target:  5'- -aGGCcuaCGGCGCGGAGgagucggugGCGACGGCa -3'
miRNA:   3'- cgCCGcugGCCGCGCCUC---------UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 179990 0.74 0.347242
Target:  5'- gGCGGUGGCCGcGacgGCGGGcccggccacGACGACGGCc -3'
miRNA:   3'- -CGCCGCUGGC-Cg--CGCCU---------CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 74381 0.74 0.347242
Target:  5'- gGgGGCGGCCGGCGCGacuacacgaccGAGcgccuCGACGAg -3'
miRNA:   3'- -CgCCGCUGGCCGCGC-----------CUCu----GCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 153013 0.74 0.347242
Target:  5'- aCGGCgGACUgGGCGaCGGGGACGggaACGACg -3'
miRNA:   3'- cGCCG-CUGG-CCGC-GCCUCUGC---UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 191669 0.74 0.354542
Target:  5'- aCGGCG-CCGGCaGCGGcGGCGGCGuGCc -3'
miRNA:   3'- cGCCGCuGGCCG-CGCCuCUGCUGC-UG- -5'
10793 3' -61.3 NC_002794.1 + 87363 0.74 0.36195
Target:  5'- gGCGGCGAgCGGCGUucuGGGcGGCG-CGGCc -3'
miRNA:   3'- -CGCCGCUgGCCGCG---CCU-CUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 94149 0.74 0.36195
Target:  5'- cGCGGCGGCgcuggaCGGUgGgGGGGACGGgGACg -3'
miRNA:   3'- -CGCCGCUG------GCCG-CgCCUCUGCUgCUG- -5'
10793 3' -61.3 NC_002794.1 + 184507 0.73 0.369464
Target:  5'- gGCGGCGcgggccCCGcGCGCGGcgcGGGCGACGcCg -3'
miRNA:   3'- -CGCCGCu-----GGC-CGCGCC---UCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 73283 0.73 0.369464
Target:  5'- cGCGGCGAcgcgcCCGGUcuCGGAaccgaaccgcGACGGCGACg -3'
miRNA:   3'- -CGCCGCU-----GGCCGc-GCCU----------CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 192142 0.73 0.369464
Target:  5'- uGCuGCuGCCGGCGCGGucGCGGCGGa -3'
miRNA:   3'- -CGcCGcUGGCCGCGCCucUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 141302 0.73 0.377085
Target:  5'- cGUGGCGcGCCGGCGaCGGcaccGGCGuCGGCu -3'
miRNA:   3'- -CGCCGC-UGGCCGC-GCCu---CUGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.