miRNA display CGI


Results 81 - 100 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 70668 0.73 0.377085
Target:  5'- cGCGGCGGCCGcCGCGGcGGUGACGuCc -3'
miRNA:   3'- -CGCCGCUGGCcGCGCCuCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 145780 0.73 0.38481
Target:  5'- cGCGGagucgucccCGGCCGGCuCGGAcGACGACGcCg -3'
miRNA:   3'- -CGCC---------GCUGGCCGcGCCU-CUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 99572 0.73 0.38481
Target:  5'- cGCgGGCGAggggGGUGCGGAGggcGCGGCGGCg -3'
miRNA:   3'- -CG-CCGCUgg--CCGCGCCUC---UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 141380 0.73 0.38793
Target:  5'- aCGGCGACCguccgucguucggggGGCuCGGcGACGACGAUg -3'
miRNA:   3'- cGCCGCUGG---------------CCGcGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 152583 0.73 0.391852
Target:  5'- cGCGGCGGCCgccacgucccugcGGCGCGGGcccaaGCGGCG-Ca -3'
miRNA:   3'- -CGCCGCUGG-------------CCGCGCCUc----UGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 100377 0.73 0.400573
Target:  5'- -aGGUGGCCGacgucCGCGGcGugGACGACg -3'
miRNA:   3'- cgCCGCUGGCc----GCGCCuCugCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 145554 0.73 0.400573
Target:  5'- aGCGGCccGACCGGUucGCGGAcGAgCGcCGACg -3'
miRNA:   3'- -CGCCG--CUGGCCG--CGCCU-CU-GCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 180365 0.73 0.400573
Target:  5'- -aGGaCGACCGGCGCGaGGACGcugcCGGCc -3'
miRNA:   3'- cgCC-GCUGGCCGCGCcUCUGCu---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 185769 0.73 0.403774
Target:  5'- cGCGGCcgcccgucacacgucGGCCGGCGCGGGGACccacauCGcCg -3'
miRNA:   3'- -CGCCG---------------CUGGCCGCGCCUCUGcu----GCuG- -5'
10793 3' -61.3 NC_002794.1 + 101818 0.73 0.408607
Target:  5'- aGCGGCGcGCCGuGCGCgaggccaugcgGGAGuGCGAgGACg -3'
miRNA:   3'- -CGCCGC-UGGC-CGCG-----------CCUC-UGCUgCUG- -5'
10793 3' -61.3 NC_002794.1 + 185178 0.73 0.408607
Target:  5'- cGCGGCGcggUCGGCGCGGucGGCGcggucaucGCGGCu -3'
miRNA:   3'- -CGCCGCu--GGCCGCGCCu-CUGC--------UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 53307 0.73 0.408607
Target:  5'- aGCGGuCGGCCGGCGCcGcGAGAuCGGCu-- -3'
miRNA:   3'- -CGCC-GCUGGCCGCG-C-CUCU-GCUGcug -5'
10793 3' -61.3 NC_002794.1 + 118978 0.72 0.415923
Target:  5'- gGUGGCGGagcacguCCGGgCGCGGGGA-GACGAg -3'
miRNA:   3'- -CGCCGCU-------GGCC-GCGCCUCUgCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 129082 0.72 0.416741
Target:  5'- gGCGGCGGaccguCCGGUggGUGGAcuGGCGACGAg -3'
miRNA:   3'- -CGCCGCU-----GGCCG--CGCCU--CUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 79983 0.72 0.424973
Target:  5'- uCGGCGACgaGGagGCGGAggaggacgagGACGGCGACg -3'
miRNA:   3'- cGCCGCUGg-CCg-CGCCU----------CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 145823 0.72 0.424973
Target:  5'- gGCGGCGAgCCGaGCGCGucGACGGucgccacgcuCGACg -3'
miRNA:   3'- -CGCCGCU-GGC-CGCGCcuCUGCU----------GCUG- -5'
10793 3' -61.3 NC_002794.1 + 110527 0.72 0.424973
Target:  5'- uCGGCGugCGGgagaaCGCGGcGACGACGuGCu -3'
miRNA:   3'- cGCCGCugGCC-----GCGCCuCUGCUGC-UG- -5'
10793 3' -61.3 NC_002794.1 + 58059 0.72 0.424973
Target:  5'- uCGGCGGCCccGGCgGCGGcgGGACgGGCGGCc -3'
miRNA:   3'- cGCCGCUGG--CCG-CGCC--UCUG-CUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 184585 0.72 0.424973
Target:  5'- gGCGGCGGCCacGCGCGGccGCGGgauCGGCa -3'
miRNA:   3'- -CGCCGCUGGc-CGCGCCucUGCU---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 18820 0.72 0.424973
Target:  5'- uCGGCGaccucgGCCGGCGCGGAGGaGACc-- -3'
miRNA:   3'- cGCCGC------UGGCCGCGCCUCUgCUGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.