Results 21 - 40 of 350 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 95601 | 0.66 | 0.7819 |
Target: 5'- cGCGGCG-CCGGagcgcauCGUGGAccUGAUGACc -3' miRNA: 3'- -CGCCGCuGGCC-------GCGCCUcuGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 122628 | 0.66 | 0.780169 |
Target: 5'- cGCGGCuACgGGCacGCGGuGGACGugaucuaccugcugGCGGCg -3' miRNA: 3'- -CGCCGcUGgCCG--CGCC-UCUGC--------------UGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 181897 | 0.66 | 0.777564 |
Target: 5'- -aGGCGACa-GCGCGG-GucguacaccacccgcGCGACGGCc -3' miRNA: 3'- cgCCGCUGgcCGCGCCuC---------------UGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 181744 | 0.66 | 0.774074 |
Target: 5'- cGCGaGCGGCCGGCcagcccGCuGAcGcCGAUGGCg -3' miRNA: 3'- -CGC-CGCUGGCCG------CGcCU-CuGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 92483 | 0.66 | 0.774074 |
Target: 5'- -gGGCcucaACCGGUGCGuGGACGagGCGGCc -3' miRNA: 3'- cgCCGc---UGGCCGCGCcUCUGC--UGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 6844 | 0.66 | 0.774074 |
Target: 5'- cCGG--GCCGGC-CGGAGAgGAgGACu -3' miRNA: 3'- cGCCgcUGGCCGcGCCUCUgCUgCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 50346 | 0.66 | 0.774074 |
Target: 5'- uCGGUcACCGGCuccgccaugaccGCGGAGcCGGcCGGCa -3' miRNA: 3'- cGCCGcUGGCCG------------CGCCUCuGCU-GCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 129220 | 0.66 | 0.774074 |
Target: 5'- gGCGGUGGauaGGCGCGaacGGGCGGCuccGGCg -3' miRNA: 3'- -CGCCGCUgg-CCGCGCc--UCUGCUG---CUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 116365 | 0.66 | 0.774074 |
Target: 5'- cGCGGUccGACCGGU-CGGuGGCGuGCGGg -3' miRNA: 3'- -CGCCG--CUGGCCGcGCCuCUGC-UGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 115598 | 0.66 | 0.774074 |
Target: 5'- uGCGGuCGAcccgcucgcCCGGCGCcgGGAGGCGGg--- -3' miRNA: 3'- -CGCC-GCU---------GGCCGCG--CCUCUGCUgcug -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 91195 | 0.66 | 0.774074 |
Target: 5'- cCGGCGACgCuGUuCGcGGACGGCGACg -3' miRNA: 3'- cGCCGCUG-GcCGcGCcUCUGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 194115 | 0.66 | 0.774074 |
Target: 5'- uGCGGC-ACCGcGCGCacggcuGAGGCaGCGGCc -3' miRNA: 3'- -CGCCGcUGGC-CGCGc-----CUCUGcUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 184365 | 0.66 | 0.774074 |
Target: 5'- aGCGGCGcucCCaGCaGCGGAGGCaGuCGAa -3' miRNA: 3'- -CGCCGCu--GGcCG-CGCCUCUG-CuGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 54841 | 0.66 | 0.771445 |
Target: 5'- gGCGGCacccaacgcccguaGGCCGGCGCGG-GcCGcCGcaGCg -3' miRNA: 3'- -CGCCG--------------CUGGCCGCGCCuCuGCuGC--UG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 184063 | 0.66 | 0.766159 |
Target: 5'- cGCGGCGAagcggcacgcgcccaCGGUguaGCGGcAGAaCGGCGAa -3' miRNA: 3'- -CGCCGCUg--------------GCCG---CGCC-UCU-GCUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 90814 | 0.66 | 0.765274 |
Target: 5'- gGUGGCGugCGGaCGCccaucagucGGuacGAgGGCGGCg -3' miRNA: 3'- -CGCCGCugGCC-GCG---------CCu--CUgCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 64016 | 0.66 | 0.765274 |
Target: 5'- --uGCGGCUGGCGauguCGGAgcuccaGugGACGGCg -3' miRNA: 3'- cgcCGCUGGCCGC----GCCU------CugCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 145324 | 0.66 | 0.765274 |
Target: 5'- cGCGGCGGgCGGCGCucGGGCccgaGCGGg -3' miRNA: 3'- -CGCCGCUgGCCGCGccUCUGc---UGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 160322 | 0.66 | 0.765274 |
Target: 5'- uUGG-GGCUGgaGCGCGGAugGGCGACGAa -3' miRNA: 3'- cGCCgCUGGC--CGCGCCU--CUGCUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 113580 | 0.66 | 0.765274 |
Target: 5'- uCGGCGuccugcacgaCGGCGCGGAGuuucuccaGCGccGCGGCc -3' miRNA: 3'- cGCCGCug--------GCCGCGCCUC--------UGC--UGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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