miRNA display CGI


Results 41 - 60 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 188344 0.66 0.765274
Target:  5'- gGCGGCG-CCGucGCGCccguccGGccGGCGGCGGCc -3'
miRNA:   3'- -CGCCGCuGGC--CGCG------CCu-CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 113675 0.66 0.763501
Target:  5'- cGCGGCGAgcaggcccgccaccgUCGGCaGCGccagguucuggcucaGGGACGGCGuCg -3'
miRNA:   3'- -CGCCGCU---------------GGCCG-CGC---------------CUCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 2712 0.66 0.75637
Target:  5'- aGgGGCGGuCUGGgGCGGucuuUGGCGACc -3'
miRNA:   3'- -CgCCGCU-GGCCgCGCCucu-GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 140006 0.66 0.75637
Target:  5'- uGCgGGUGGa-GGcCGCGGAGGCcGCGGCc -3'
miRNA:   3'- -CG-CCGCUggCC-GCGCCUCUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 121802 0.66 0.75637
Target:  5'- cGCGacCGGCCGGCGCcugccgcugcaGGAucgcuACGACGGCc -3'
miRNA:   3'- -CGCc-GCUGGCCGCG-----------CCUc----UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 65361 0.66 0.75637
Target:  5'- -gGGCG-CCGGCGCccuGACGccacACGGCg -3'
miRNA:   3'- cgCCGCuGGCCGCGccuCUGC----UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 147104 0.66 0.75637
Target:  5'- uCGGCGcCCGGCccaaGGAcgaaGACGuCGACg -3'
miRNA:   3'- cGCCGCuGGCCGcg--CCU----CUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 183613 0.66 0.75637
Target:  5'- cGCGcGCGGCCGGCGCccccGCGccccCGACu -3'
miRNA:   3'- -CGC-CGCUGGCCGCGccucUGCu---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 113500 0.66 0.75637
Target:  5'- cGCGcGCGGCCGagagcCGCGGAGGgagcucCGcCGGCu -3'
miRNA:   3'- -CGC-CGCUGGCc----GCGCCUCU------GCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 11946 0.67 0.750981
Target:  5'- cGCGGUGAgCGuGCucuccgucuacgcucGUGGAGAUGGCGuCc -3'
miRNA:   3'- -CGCCGCUgGC-CG---------------CGCCUCUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 78985 0.67 0.74737
Target:  5'- uGCuGCGGCCGcuCcCGGAGucGCGGCGACu -3'
miRNA:   3'- -CGcCGCUGGCc-GcGCCUC--UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 18555 0.67 0.74737
Target:  5'- gGCGGCGACCGcGaccgugccCGCGaccgucuCGACGACg -3'
miRNA:   3'- -CGCCGCUGGC-C--------GCGCcucu---GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 156398 0.67 0.74737
Target:  5'- -aGaGCGGCCGGCGCcGcGGCcGCGGCc -3'
miRNA:   3'- cgC-CGCUGGCCGCGcCuCUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 99942 0.67 0.74737
Target:  5'- uGCGGCuGuuCGGC-CGGAccGcCGACGGCg -3'
miRNA:   3'- -CGCCG-CugGCCGcGCCU--CuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 55357 0.67 0.74737
Target:  5'- -aGGCGGCCgaGGCgGCcGAGGCGGCcgaGGCg -3'
miRNA:   3'- cgCCGCUGG--CCG-CGcCUCUGCUG---CUG- -5'
10793 3' -61.3 NC_002794.1 + 116062 0.67 0.74737
Target:  5'- aGC-GCGACUGGgguCGCGGAGcgcucggcGCGGCGGu -3'
miRNA:   3'- -CGcCGCUGGCC---GCGCCUC--------UGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 104468 0.67 0.74737
Target:  5'- gGCGGCGugUgcaGGaUGCGGGcGGCcACGGCg -3'
miRNA:   3'- -CGCCGCugG---CC-GCGCCU-CUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 122779 0.67 0.74737
Target:  5'- cGCGaGCGGCCucgacGGCGUGGAGuuCGcCGuCa -3'
miRNA:   3'- -CGC-CGCUGG-----CCGCGCCUCu-GCuGCuG- -5'
10793 3' -61.3 NC_002794.1 + 109166 0.67 0.746465
Target:  5'- aUGGCGACgagCGGCgguagcgGCGGAGGCaGCGGg -3'
miRNA:   3'- cGCCGCUG---GCCG-------CGCCUCUGcUGCUg -5'
10793 3' -61.3 NC_002794.1 + 133498 0.67 0.738282
Target:  5'- cGCGGCGACC--CGUcc-GACGGCGACc -3'
miRNA:   3'- -CGCCGCUGGccGCGccuCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.