Results 61 - 80 of 350 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10793 | 3' | -61.3 | NC_002794.1 | + | 44260 | 0.67 | 0.738282 |
Target: 5'- -gGGCGGCuCGGcCGcCGGGGACGGagGAg -3' miRNA: 3'- cgCCGCUG-GCC-GC-GCCUCUGCUg-CUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 53257 | 0.67 | 0.738282 |
Target: 5'- cCGGCGucGCC-GCGCGacaacGGGGCGGCGAg -3' miRNA: 3'- cGCCGC--UGGcCGCGC-----CUCUGCUGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 177718 | 0.67 | 0.738282 |
Target: 5'- aCGGCGGuccaCGGgGCGGAucCGAcCGACu -3' miRNA: 3'- cGCCGCUg---GCCgCGCCUcuGCU-GCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 127925 | 0.67 | 0.738282 |
Target: 5'- gGCGGgGAuUCGGgGCGuGucggucauguGGACGugGACg -3' miRNA: 3'- -CGCCgCU-GGCCgCGC-C----------UCUGCugCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 133498 | 0.67 | 0.738282 |
Target: 5'- cGCGGCGACC--CGUcc-GACGGCGACc -3' miRNA: 3'- -CGCCGCUGGccGCGccuCUGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 146617 | 0.67 | 0.738282 |
Target: 5'- gGCGGCGAggacgucgaaGGCGguacCGGGaGCGGCGACg -3' miRNA: 3'- -CGCCGCUgg--------CCGC----GCCUcUGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 14455 | 0.67 | 0.732789 |
Target: 5'- cGCgGGCGACCgugucgagcGGCGCGccgcgcucgcuguucGcGGCGGCGGCc -3' miRNA: 3'- -CG-CCGCUGG---------CCGCGC---------------CuCUGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 141947 | 0.67 | 0.729113 |
Target: 5'- gGCGGCGACCcguuggacGGC-CGG-GAUGAuCGAg -3' miRNA: 3'- -CGCCGCUGG--------CCGcGCCuCUGCU-GCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 106325 | 0.67 | 0.729113 |
Target: 5'- cGCGcGCGACgGGuCGaCGGuucgccGGGuCGACGGCg -3' miRNA: 3'- -CGC-CGCUGgCC-GC-GCC------UCU-GCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 78327 | 0.67 | 0.729113 |
Target: 5'- cCGGCGcgaCGG-GCGGAGGCGcCGGa -3' miRNA: 3'- cGCCGCug-GCCgCGCCUCUGCuGCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 128686 | 0.67 | 0.729113 |
Target: 5'- cGCGGCGGuCCGGaggcuCGGAacaGACGGacaGACg -3' miRNA: 3'- -CGCCGCU-GGCCgc---GCCU---CUGCUg--CUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 54978 | 0.67 | 0.729113 |
Target: 5'- uGCa-CGACCcGcCGCGGcGACGGCGGCg -3' miRNA: 3'- -CGccGCUGGcC-GCGCCuCUGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 49662 | 0.67 | 0.728191 |
Target: 5'- cGCGcCGACCGGUacgcgaagcgcaaGCGGAcgagucgcgucgGcACGACGACu -3' miRNA: 3'- -CGCcGCUGGCCG-------------CGCCU------------C-UGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 143074 | 0.67 | 0.71987 |
Target: 5'- cGCGGCGGCagaCGuaGUGGAGguuGCG-CGGCg -3' miRNA: 3'- -CGCCGCUG---GCcgCGCCUC---UGCuGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 66252 | 0.67 | 0.71987 |
Target: 5'- uGCGGCGAcccguCCGGCcccguagacgaGCGGAGGgGucCGAg -3' miRNA: 3'- -CGCCGCU-----GGCCG-----------CGCCUCUgCu-GCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 111096 | 0.67 | 0.71987 |
Target: 5'- uCGGCGGgcCCGGCG-GGAccguggccGuCGACGGCg -3' miRNA: 3'- cGCCGCU--GGCCGCgCCU--------CuGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 263 | 0.67 | 0.71987 |
Target: 5'- cGCcGCGcGCgCGGaCGCGaGGACGGCGGCc -3' miRNA: 3'- -CGcCGC-UG-GCC-GCGCcUCUGCUGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 34708 | 0.67 | 0.71987 |
Target: 5'- aGCaGGCccGCCGGCGCcacGAGGCGcggGCGGCc -3' miRNA: 3'- -CG-CCGc-UGGCCGCGc--CUCUGC---UGCUG- -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 143400 | 0.67 | 0.71987 |
Target: 5'- uGCuGCucGACCGGCGCGGgccGGGCGAaGGu -3' miRNA: 3'- -CGcCG--CUGGCCGCGCC---UCUGCUgCUg -5' |
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10793 | 3' | -61.3 | NC_002794.1 | + | 111132 | 0.67 | 0.718942 |
Target: 5'- cCGGCGGCCGGUgcuccacgcgguaGCGGgucAGGCaGACG-Cg -3' miRNA: 3'- cGCCGCUGGCCG-------------CGCC---UCUG-CUGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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