miRNA display CGI


Results 81 - 100 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 13318 0.67 0.714293
Target:  5'- cCGGCGAgcgacgaccgcucccCCGGU-CGGGGGUGGCGGCg -3'
miRNA:   3'- cGCCGCU---------------GGCCGcGCCUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 62507 0.67 0.710562
Target:  5'- gGCGGCGccGCCGGCGCcuccgcccaccGuGACGAagagccCGACg -3'
miRNA:   3'- -CGCCGC--UGGCCGCGc----------CuCUGCU------GCUG- -5'
10793 3' -61.3 NC_002794.1 + 64109 0.67 0.710562
Target:  5'- --cGCGACCGGCGCGucugcacGCGGuCGACg -3'
miRNA:   3'- cgcCGCUGGCCGCGCcuc----UGCU-GCUG- -5'
10793 3' -61.3 NC_002794.1 + 75287 0.67 0.710562
Target:  5'- cCGGcCGGCCGGCGCcucgccagccGAcAUGGCGACa -3'
miRNA:   3'- cGCC-GCUGGCCGCGc---------CUcUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 121487 0.67 0.710562
Target:  5'- cCGGUucgGACgCGGCcuccGCcGGGGCGACGACg -3'
miRNA:   3'- cGCCG---CUG-GCCG----CGcCUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 126387 0.67 0.710562
Target:  5'- cCGG-GGCCuGCGCGGcGGCGugcGCGGCg -3'
miRNA:   3'- cGCCgCUGGcCGCGCCuCUGC---UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 128318 0.67 0.710562
Target:  5'- cGUGGCGACCGaGCccgccCGGAcGCgGugGACu -3'
miRNA:   3'- -CGCCGCUGGC-CGc----GCCUcUG-CugCUG- -5'
10793 3' -61.3 NC_002794.1 + 123402 0.67 0.710562
Target:  5'- uGCuccGCG-UCGGCGUGGAGuACGacaGCGACg -3'
miRNA:   3'- -CGc--CGCuGGCCGCGCCUC-UGC---UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 180915 0.67 0.704948
Target:  5'- cGCGGUcucGCCGGCGCcgucGGAGgucggucucgcguccGCGGcCGACg -3'
miRNA:   3'- -CGCCGc--UGGCCGCG----CCUC---------------UGCU-GCUG- -5'
10793 3' -61.3 NC_002794.1 + 180694 0.67 0.701195
Target:  5'- cCGGCGcCCGGCGgGcGGACcAUGGCu -3'
miRNA:   3'- cGCCGCuGGCCGCgCcUCUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 149684 0.67 0.701195
Target:  5'- cGCGcuCGACUGGcCGCGGGGGCcgccuGGCGGg -3'
miRNA:   3'- -CGCc-GCUGGCC-GCGCCUCUG-----CUGCUg -5'
10793 3' -61.3 NC_002794.1 + 141801 0.67 0.701195
Target:  5'- cGCGGguCGGCCucGGacaGcCGGuuGGACGACGACg -3'
miRNA:   3'- -CGCC--GCUGG--CCg--C-GCC--UCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 37270 0.67 0.701195
Target:  5'- uCGGCGGgC-GCGCGGGcGCGGCGuACa -3'
miRNA:   3'- cGCCGCUgGcCGCGCCUcUGCUGC-UG- -5'
10793 3' -61.3 NC_002794.1 + 66825 0.67 0.701195
Target:  5'- -gGGCGcCCGGCGCGacuccGGGCGccgccgucggcGCGGCg -3'
miRNA:   3'- cgCCGCuGGCCGCGCc----UCUGC-----------UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 182553 0.67 0.701195
Target:  5'- cGCcGCGGCCGGCaccgucacCGGgaucuccgugcGGGCGACGAUg -3'
miRNA:   3'- -CGcCGCUGGCCGc-------GCC-----------UCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 106415 0.67 0.700256
Target:  5'- gGCGGCG-CCGGgGCucauggcgcuguuGGAGAaGGCGGu -3'
miRNA:   3'- -CGCCGCuGGCCgCG-------------CCUCUgCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 122201 0.67 0.700256
Target:  5'- cGCGGCGaagcgguGCCGGCGCcGcuACGauaaGCGGCg -3'
miRNA:   3'- -CGCCGC-------UGGCCGCGcCucUGC----UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 195238 0.67 0.700256
Target:  5'- cGCGGCGucACCaGCaccgaccaccccgGCGGGGACugcaGCGACa -3'
miRNA:   3'- -CGCCGC--UGGcCG-------------CGCCUCUGc---UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 49126 0.68 0.691778
Target:  5'- cCGG-GACCGGC-CGGAGGuCGuuguCGACc -3'
miRNA:   3'- cGCCgCUGGCCGcGCCUCU-GCu---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 112318 0.68 0.691778
Target:  5'- uCGGCGccgaCGGCGgGGAGcGCGcCGGCc -3'
miRNA:   3'- cGCCGCug--GCCGCgCCUC-UGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.