miRNA display CGI


Results 101 - 120 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 49126 0.68 0.691778
Target:  5'- cCGG-GACCGGC-CGGAGGuCGuuguCGACc -3'
miRNA:   3'- cGCCgCUGGCCGcGCCUCU-GCu---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 138923 0.68 0.691778
Target:  5'- cGCGGCGgauggucuGCCGGUGCGcccccaccGuGGCGugcuGCGACg -3'
miRNA:   3'- -CGCCGC--------UGGCCGCGC--------CuCUGC----UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 116132 0.68 0.688943
Target:  5'- cGCGGCGGCggCGGCgGCGGccAGGgccugcaccgccucCGugGGCa -3'
miRNA:   3'- -CGCCGCUG--GCCG-CGCC--UCU--------------GCugCUG- -5'
10793 3' -61.3 NC_002794.1 + 71278 0.68 0.686106
Target:  5'- cGCGGUcccGauacggaaaauagccGCCGGCGCGcucGGGCGGCGAg -3'
miRNA:   3'- -CGCCG---C---------------UGGCCGCGCc--UCUGCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 186301 0.68 0.686106
Target:  5'- -aGGCGGCCggucgccgcGGCGCGcucguccuccaacacGAucGACGGCGGCg -3'
miRNA:   3'- cgCCGCUGG---------CCGCGC---------------CU--CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 110430 0.68 0.682316
Target:  5'- -gGGCGGCugucgucguCGGUgGCGGAGGcCGGCGAg -3'
miRNA:   3'- cgCCGCUG---------GCCG-CGCCUCU-GCUGCUg -5'
10793 3' -61.3 NC_002794.1 + 114197 0.68 0.682316
Target:  5'- aGCGGCGccacgGCCGGCGUcuc--CGGCGGCa -3'
miRNA:   3'- -CGCCGC-----UGGCCGCGccucuGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 68827 0.68 0.682316
Target:  5'- aCGGCGacgccGCCGGCGCucgcGGucccCGACGACc -3'
miRNA:   3'- cGCCGC-----UGGCCGCG----CCucu-GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 110326 0.68 0.682316
Target:  5'- cGCcGCGACgCcGCGCGGGGGgucuccgccgUGGCGACg -3'
miRNA:   3'- -CGcCGCUG-GcCGCGCCUCU----------GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 112736 0.68 0.682316
Target:  5'- --cGCGGaaGGCGCGGuGcuccGCGGCGGCg -3'
miRNA:   3'- cgcCGCUggCCGCGCCuC----UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 89986 0.68 0.682316
Target:  5'- cCGGCguucGACCGGUGCGcacgaucuucGGGACGGagauCGACg -3'
miRNA:   3'- cGCCG----CUGGCCGCGC----------CUCUGCU----GCUG- -5'
10793 3' -61.3 NC_002794.1 + 86972 0.68 0.681368
Target:  5'- uGCGGCGAgcugcgacgagguCCGGCGgcuuuCGGcGGCGugGGu -3'
miRNA:   3'- -CGCCGCU-------------GGCCGC-----GCCuCUGCugCUg -5'
10793 3' -61.3 NC_002794.1 + 62454 0.68 0.68042
Target:  5'- aCGGCGAgUucguccuccucgaGGCGCGccucgacgagcgcGAGugGACGGCg -3'
miRNA:   3'- cGCCGCUgG-------------CCGCGC-------------CUCugCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 55402 0.68 0.672819
Target:  5'- -aGGCGGCCgaGGCgGCcGAGGCGAcccCGGCg -3'
miRNA:   3'- cgCCGCUGG--CCG-CGcCUCUGCU---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 115933 0.68 0.672819
Target:  5'- gGCGGCgGGCCGGCccgccgcgugucGcCGGGGACcGugGGg -3'
miRNA:   3'- -CGCCG-CUGGCCG------------C-GCCUCUG-CugCUg -5'
10793 3' -61.3 NC_002794.1 + 116909 0.68 0.672819
Target:  5'- gGCGGcCGGuCCGGCGuCGGcuccGGCGucguCGGCg -3'
miRNA:   3'- -CGCC-GCU-GGCCGC-GCCu---CUGCu---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 32581 0.68 0.672819
Target:  5'- cGCGGCGguGCCGGgGCcGGGGcCGG-GGCc -3'
miRNA:   3'- -CGCCGC--UGGCCgCG-CCUCuGCUgCUG- -5'
10793 3' -61.3 NC_002794.1 + 180873 0.68 0.672819
Target:  5'- gGCGGCGGauCCGGCGCGcccGGucuCGGCcGCg -3'
miRNA:   3'- -CGCCGCU--GGCCGCGCc--UCu--GCUGcUG- -5'
10793 3' -61.3 NC_002794.1 + 149985 0.68 0.672819
Target:  5'- cCGGCGGCCGcuaucugccGCGCuGcuACGACGGCc -3'
miRNA:   3'- cGCCGCUGGC---------CGCGcCucUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 14682 0.68 0.664247
Target:  5'- gGCGGCGGucgcgcugcuccugaCGGCGUGGGGAgCGcugcucGCGGCu -3'
miRNA:   3'- -CGCCGCUg--------------GCCGCGCCUCU-GC------UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.