miRNA display CGI


Results 21 - 40 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 19462 0.7 0.521328
Target:  5'- aGCGGCGGCggCGGCGggacccgcCGGucgcccgcaccGACGACGGCg -3'
miRNA:   3'- -CGCCGCUG--GCCGC--------GCCu----------CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 20985 0.68 0.644182
Target:  5'- aGCGGCGG-CGGCaGCGaccGCGGCGGCc -3'
miRNA:   3'- -CGCCGCUgGCCG-CGCcucUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 21887 0.78 0.204203
Target:  5'- cGCGggguguccGCGGCCugcgucggugguGGCgGCGGAGACGACGGCg -3'
miRNA:   3'- -CGC--------CGCUGG------------CCG-CGCCUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 26107 0.69 0.63461
Target:  5'- cCGGCGAUCGcCGUGGGccugccucGACGAcCGACg -3'
miRNA:   3'- cGCCGCUGGCcGCGCCU--------CUGCU-GCUG- -5'
10793 3' -61.3 NC_002794.1 + 26652 0.76 0.262226
Target:  5'- aCGGCGGCCGGCucgucgGCGGGGugGAgCGcCa -3'
miRNA:   3'- cGCCGCUGGCCG------CGCCUCugCU-GCuG- -5'
10793 3' -61.3 NC_002794.1 + 32305 0.7 0.539803
Target:  5'- cGCGGCGGCCgcgccggccgcGGC-CGGAGacaagcccuccGCGAuCGACa -3'
miRNA:   3'- -CGCCGCUGG-----------CCGcGCCUC-----------UGCU-GCUG- -5'
10793 3' -61.3 NC_002794.1 + 32581 0.68 0.672819
Target:  5'- cGCGGCGguGCCGGgGCcGGGGcCGG-GGCc -3'
miRNA:   3'- -CGCCGC--UGGCCgCG-CCUCuGCUgCUG- -5'
10793 3' -61.3 NC_002794.1 + 32615 0.69 0.577364
Target:  5'- cCGGgGAUCGGgccCGCcgacgaagagGGGGGCGACGACc -3'
miRNA:   3'- cGCCgCUGGCC---GCG----------CCUCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 32870 0.8 0.139826
Target:  5'- cCGGCGGgCGGCgGCGGcGGCGGCGGCa -3'
miRNA:   3'- cGCCGCUgGCCG-CGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 34083 0.69 0.59637
Target:  5'- cCGGCGGCCgGGCagccgucggGCGGcccGGACcGCGACg -3'
miRNA:   3'- cGCCGCUGG-CCG---------CGCC---UCUGcUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 34708 0.67 0.71987
Target:  5'- aGCaGGCccGCCGGCGCcacGAGGCGcggGCGGCc -3'
miRNA:   3'- -CG-CCGc-UGGCCGCGc--CUCUGC---UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 34747 0.76 0.274116
Target:  5'- aGCGcGCGA-CGGCGCGGugGGACG-CGGCa -3'
miRNA:   3'- -CGC-CGCUgGCCGCGCC--UCUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 36914 0.7 0.534236
Target:  5'- cGCGGCG-CCGGCcccgcgaccGCGGAGgagaaaguccgcgucGCGcgGCGGCa -3'
miRNA:   3'- -CGCCGCuGGCCG---------CGCCUC---------------UGC--UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 37270 0.67 0.701195
Target:  5'- uCGGCGGgC-GCGCGGGcGCGGCGuACa -3'
miRNA:   3'- cGCCGCUgGcCGCGCCUcUGCUGC-UG- -5'
10793 3' -61.3 NC_002794.1 + 37737 0.79 0.161445
Target:  5'- gGCGGCGccGCCGGCgGCGGc-GCGGCGGCg -3'
miRNA:   3'- -CGCCGC--UGGCCG-CGCCucUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 37883 0.81 0.120891
Target:  5'- -gGGCGGCgGGgGCGGuGGCGGCGGCa -3'
miRNA:   3'- cgCCGCUGgCCgCGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 38096 0.71 0.494096
Target:  5'- aGC-GCGACCGGCGUGaAGACG-CGGg -3'
miRNA:   3'- -CGcCGCUGGCCGCGCcUCUGCuGCUg -5'
10793 3' -61.3 NC_002794.1 + 38165 0.66 0.791334
Target:  5'- aGCaGGCGGCUGcGCuCGGcGACGAaGGCg -3'
miRNA:   3'- -CG-CCGCUGGC-CGcGCCuCUGCUgCUG- -5'
10793 3' -61.3 NC_002794.1 + 38437 0.76 0.254724
Target:  5'- gGCGGCGggccggacugaggaGCCGGCGCGGccGCGGCG-Cg -3'
miRNA:   3'- -CGCCGC--------------UGGCCGCGCCucUGCUGCuG- -5'
10793 3' -61.3 NC_002794.1 + 38620 0.68 0.663293
Target:  5'- -gGGCGcgucccgacucGCCGGUGCGGc-GCGACGGa -3'
miRNA:   3'- cgCCGC-----------UGGCCGCGCCucUGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.