miRNA display CGI


Results 41 - 60 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10793 3' -61.3 NC_002794.1 + 40077 0.69 0.633653
Target:  5'- -gGGaaACCGGgGCGGGGAgggaaagacaucuUGACGACg -3'
miRNA:   3'- cgCCgcUGGCCgCGCCUCU-------------GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 41260 0.68 0.653745
Target:  5'- cCGGCGGCCcgucgucGCGCuccGAGAaCGGCGGCg -3'
miRNA:   3'- cGCCGCUGGc------CGCGc--CUCU-GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 42600 0.8 0.150282
Target:  5'- cGCGGCGGCCGGgaGCGGGcucucuCGACGACc -3'
miRNA:   3'- -CGCCGCUGGCCg-CGCCUcu----GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 42665 0.69 0.625037
Target:  5'- aCGGCGccGCCGGCaCGGGGuACGcCGAg -3'
miRNA:   3'- cGCCGC--UGGCCGcGCCUC-UGCuGCUg -5'
10793 3' -61.3 NC_002794.1 + 44260 0.67 0.738282
Target:  5'- -gGGCGGCuCGGcCGcCGGGGACGGagGAg -3'
miRNA:   3'- cgCCGCUG-GCC-GC-GCCUCUGCUg-CUg -5'
10793 3' -61.3 NC_002794.1 + 44311 0.7 0.521328
Target:  5'- gGCGgggaGCGACCGcgaGCGCGGcGGCGAagaaGACg -3'
miRNA:   3'- -CGC----CGCUGGC---CGCGCCuCUGCUg---CUG- -5'
10793 3' -61.3 NC_002794.1 + 44352 0.71 0.503104
Target:  5'- cCGGCGAgaCCGagaGCGCGGcGGGCG-CGACg -3'
miRNA:   3'- cGCCGCU--GGC---CGCGCC-UCUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 44408 0.71 0.485162
Target:  5'- cCGGUcugaccGGCCGGCGCcGAGcggcuCGACGACa -3'
miRNA:   3'- cGCCG------CUGGCCGCGcCUCu----GCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 44719 0.78 0.194477
Target:  5'- cGCGGCGacgucgGCCGGCGCcgccGGAgggcuaaGACGGCGACu -3'
miRNA:   3'- -CGCCGC------UGGCCGCG----CCU-------CUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 46287 0.68 0.660431
Target:  5'- aGCGuucCGAacguuccgaacguuCCGaGCGCGGcGGCGACGGCg -3'
miRNA:   3'- -CGCc--GCU--------------GGC-CGCGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 46767 0.69 0.586853
Target:  5'- aCGGCGACUucgaccccaGCGGcGGCGGCGACa -3'
miRNA:   3'- cGCCGCUGGccg------CGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 47417 0.66 0.791334
Target:  5'- uCGGCG-CCGucGCGCGGAG-CGccaGGCg -3'
miRNA:   3'- cGCCGCuGGC--CGCGCCUCuGCug-CUG- -5'
10793 3' -61.3 NC_002794.1 + 49028 0.76 0.250196
Target:  5'- cGCGGCGucguCCGGCGCGGucgucagcguccaGGGCGcgcagcACGACu -3'
miRNA:   3'- -CGCCGCu---GGCCGCGCC-------------UCUGC------UGCUG- -5'
10793 3' -61.3 NC_002794.1 + 49126 0.68 0.691778
Target:  5'- cCGG-GACCGGC-CGGAGGuCGuuguCGACc -3'
miRNA:   3'- cGCCgCUGGCCGcGCCUCU-GCu---GCUG- -5'
10793 3' -61.3 NC_002794.1 + 49410 0.69 0.586853
Target:  5'- aCGGCGGCC---GCGGcGGCGGCGGCc -3'
miRNA:   3'- cGCCGCUGGccgCGCCuCUGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 49437 0.7 0.549124
Target:  5'- aCGGCGuCCGGCGCGGucgucgccguGGCGcCGcCg -3'
miRNA:   3'- cGCCGCuGGCCGCGCCu---------CUGCuGCuG- -5'
10793 3' -61.3 NC_002794.1 + 49600 0.7 0.539803
Target:  5'- --cGCGAUCGGCGaCGGcGGGCGcCGGCg -3'
miRNA:   3'- cgcCGCUGGCCGC-GCC-UCUGCuGCUG- -5'
10793 3' -61.3 NC_002794.1 + 49662 0.67 0.728191
Target:  5'- cGCGcCGACCGGUacgcgaagcgcaaGCGGAcgagucgcgucgGcACGACGACu -3'
miRNA:   3'- -CGCcGCUGGCCG-------------CGCCU------------C-UGCUGCUG- -5'
10793 3' -61.3 NC_002794.1 + 50346 0.66 0.774074
Target:  5'- uCGGUcACCGGCuccgccaugaccGCGGAGcCGGcCGGCa -3'
miRNA:   3'- cGCCGcUGGCCG------------CGCCUCuGCU-GCUG- -5'
10793 3' -61.3 NC_002794.1 + 50586 0.74 0.325992
Target:  5'- cGCGGCGgcugggugGCCGGCGCcggGGGGAUcgaGACGAg -3'
miRNA:   3'- -CGCCGC--------UGGCCGCG---CCUCUG---CUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.